Pairwise Alignments

Query, 376 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodanobacter sp000427505 FW510-R12

 Score = 80.1 bits (196), Expect = 1e-19
 Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 3/228 (1%)

Query: 66  IVSGVRGRVVEVPVKPNQPLTQGDVLFRIDPIPFEADVARLKAKVKEASQGALGLESTLK 125
           I   V G VV +       +  GDVL R+DP   +  +A  KA +    +   GL S++ 
Sbjct: 72  ITPQVPGTVVSIGADDGDLVHAGDVLVRLDPSDADVALAGAKANLAATVRKVRGLYSSMN 131

Query: 126 EAQAAVLKAIAERDKAQREYDRYQRGYQRGAFTEQQMDTTRQTYKAAQAALEVAQSKQEQ 185
            AQA V       DKA+ +Y R     + GA + +++        +A++ L  AQ + + 
Sbjct: 132 GAQADVAARKTAVDKARADYQRRVALAKSGAISAEELAHASDALTSAESNLVTAQQQYQT 191

Query: 186 AQIALDSEVGGENTTVAQLLAELRKAEFDLEQTIVRAPTDGYVTQLALRPGMMSVPLPLA 245
           +++ +D  V   +  V    A LR A  D E+  + AP DGYV + +++ G      P A
Sbjct: 192 SKVLVDDTVVASHPDVQAAAARLRAAFLDDERATLVAPVDGYVAKRSVQVGQR--VQPGA 249

Query: 246 PVMTFVHTEEKIYTAAFRQNSLQRLQPGFAAEFMFRALPGKV-FKGEV 292
            +M  V   +    A F++  L  ++ G           GKV +KG+V
Sbjct: 250 ALMAVVPLHQVWVDANFKETQLTDMRIGQPVTIESDVYGGKVAYKGKV 297