Pairwise Alignments

Query, 376 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., multidrug efflux transport system - membrane fusion protein from Pseudomonas putida KT2440

 Score = 73.2 bits (178), Expect = 1e-17
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 9/300 (3%)

Query: 56  LGSQVYSTTPIVSGVRGRVVEVPVKPNQPLTQGDVLFRIDPIPFEADVARLKAKVKEASQ 115
           +   V   TP+V+G    V  +       +  G VL + DP   E  +   +AK+  + +
Sbjct: 57  VNGNVVEITPLVAGT---VTSIGADDGDLVHAGQVLLQFDPADSEVALQSAEAKLARSVR 113

Query: 116 GALGLESTLKEAQAAVLKAIAERDKAQREYDRYQRGYQRGAFTEQQMDTTRQTYKAAQAA 175
              GL S +   +A +    AE  KAQ++++R +     GA   +++   R     AQAA
Sbjct: 114 QVRGLYSNVDSLKAQLETRQAELRKAQQDFNRRKVLADSGAIAAEELSHARDDLSVAQAA 173

Query: 176 LEVAQSKQEQAQIALDSEVGGENTTVAQLLAELRKAEFDLEQTIVRAPTDGYVTQLALRP 235
           +  A+ +   +   +D  V   +  V    A+LR+A  D  +T + AP  GYV +  ++ 
Sbjct: 174 VNSARQQLSTSSALVDDTVVSSHPDVMAAAADLRQAYLDHARTTLVAPVTGYVAKRTVQL 233

Query: 236 GMMSVPLPLAPVMTFVHTEEKIYTAAFRQNSLQRLQPGFAAEFMFRALPGKVFKGEVIEV 295
           G      P    M  +  ++    A F++  L+ ++ G   E        +V     ++ 
Sbjct: 234 GQRL--QPGTATMAVIPLDQVWIDANFKETQLREMRIGQPVEITADVYGSEVKYSGTVDS 291

Query: 296 LPAIGESQIQARGALLGT-DALRTSGRVFVTLRITDDLSQYH---LPMGSAVEVAVYSDS 351
           L A   S      A   T + ++   RV V + ++ D  + H   + + + VEV ++  S
Sbjct: 292 LGAGTGSAFALLPAQNATGNWIKIVQRVPVRIHLSPDQLKDHPLRIGLSTVVEVDLHDQS 351