Pairwise Alignments

Query, 376 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., predicted membrane fusion protein of efflux pump (NCBI) from Escherichia coli BW25113

 Score = 98.2 bits (243), Expect = 3e-25
 Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 19/283 (6%)

Query: 21  KIPLNKWTVPTAVLGGVILIGTLILLMNYNH-PFTQLGSQVYSTTPIVSGVRGRVVEVPV 79
           K P +K+  P  ++  + L+  + ++   +  P T        T  +V  V GR+VE+ V
Sbjct: 7   KAPRSKF--PALLVVALALVALVFVIWRVDSAPSTNDAYASADTIDVVPEVSGRIVELAV 64

Query: 80  KPNQPLTQGDVLFRIDPIPFEADVARLKAKVKEASQGALGLESTLKEAQ-------AAVL 132
             NQ + QGD+LFRIDP P+EA++A+ +A +    +  +  + ++   Q       A V 
Sbjct: 65  TDNQAVKQGDLLFRIDPRPYEANLAKAEASLAALDKQIMLTQRSVDAQQFGADSVNATVE 124

Query: 133 KAIAERDKAQREYDRYQRGYQRGAFTEQQMDTTRQTYKAAQAALEVAQSKQEQAQIALDS 192
           KA A   +A     R +   + G  + + +D  R   +AA+A L     + + A     S
Sbjct: 125 KARAAAKQATDTLRRTEPLLKEGFVSAEDVDRARTAQRAAEADLNAVLLQAQSAA----S 180

Query: 193 EVGGENTTVAQ---LLAELRKAEFDLEQTIVRAPTDGYVTQLALRPGMMSVPLPLAPVMT 249
            V G +  VAQ   + A++   +  LE   VRAP DG V  L    G  +    + P+ T
Sbjct: 181 AVSGVDALVAQRAAVEADIALTKLHLEMATVRAPFDGRVISLKTSVGQFA--SAMRPIFT 238

Query: 250 FVHTEEKIYTAAFRQNSLQRLQPGFAAEFMFRALPGKVFKGEV 292
            + T      A FR+  L+ ++ G  A     +  GK F+G+V
Sbjct: 239 LIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKTFEGKV 281