Pairwise Alignments

Query, 376 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., hypothetical protein (NCBI) from Escherichia coli BW25113

 Score =  330 bits (847), Expect = 3e-95
 Identities = 173/378 (45%), Positives = 243/378 (64%), Gaps = 2/378 (0%)

Query: 1   MDLLLILTYTALCVAVFKVFKIPLNKWTVPTAVLGGVILIGTLILLMNYNHPFTQLGSQV 60
           MDLL++LTY AL  AVFK+F+IP+N+WT+ TA LGGV L+  LILLMNYNHP+T    + 
Sbjct: 1   MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLILLMNYNHPYTFTAQKA 60

Query: 61  YSTTPIVSGVRGRVVEVPVKPNQPLTQGDVLFRIDPIPFEADVARLKAKVKEASQGALGL 120
               PI   V G V EV  K NQ + +G+VLF++DP+ ++A V RL+A +  A+     L
Sbjct: 61  VIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTL 120

Query: 121 ESTLKEAQAAVLKAIAERDKAQREYDRYQRGYQRGA--FTEQQMDTTRQTYKAAQAALEV 178
            + L EAQA   +  AERD+  + Y RY +G Q     F+E+ +D  RQ + A  A ++ 
Sbjct: 121 RAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKG 180

Query: 179 AQSKQEQAQIALDSEVGGENTTVAQLLAELRKAEFDLEQTIVRAPTDGYVTQLALRPGMM 238
           + ++Q Q Q  LDS V GE + +  L A+L +A+++LEQT++RAP++GYVTQ+ +RPG  
Sbjct: 181 SVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTY 240

Query: 239 SVPLPLAPVMTFVHTEEKIYTAAFRQNSLQRLQPGFAAEFMFRALPGKVFKGEVIEVLPA 298
           +  LPL PVM F+  +++   A FRQNSL RL+PG  AE +F ALPG+VF G++  +LP 
Sbjct: 241 AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPV 300

Query: 299 IGESQIQARGALLGTDALRTSGRVFVTLRITDDLSQYHLPMGSAVEVAVYSDSFEHVSIM 358
           +     QA+G L     +  +  V  T+ +  +     LP G   +VAVYSD F HVS+M
Sbjct: 301 VPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHVSVM 360

Query: 359 RKVLIRMKSWQNYLYLDH 376
           RKVL+RM SW +YLYLDH
Sbjct: 361 RKVLLRMTSWMHYLYLDH 378