Pairwise Alignments

Query, 376 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., putative membrane protein (VIMSS) from Escherichia coli BW25113

 Score = 73.9 bits (180), Expect = 5e-18
 Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 52/268 (19%)

Query: 46  LMNY--NHPFTQLGSQVYSTTPIVSGVRGRVVEVPVKPNQPLTQGDVLFRIDPIPFEADV 103
           L NY    P+T+ G        I   V GR+VE+ +K NQ +  GD+L  ID  PF+  +
Sbjct: 25  LWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQ--I 82

Query: 104 ARLKAKVKEASQGALGLESTLKEAQAAVLKAIAERDKAQREYDRYQRGYQRGAFTEQQMD 163
           A L                    AQA + KA ++  KA  E +R +R   +   + +++D
Sbjct: 83  AEL-------------------NAQAQLAKAQSDLAKANNEANR-RRHLSQNFISAEELD 122

Query: 164 TTRQTYKAAQAALEVAQSKQEQAQIALDSEVGGENTTVAQLLAELRKAEFDLEQTIVRAP 223
           T     KA QA+++ AQ                         A L++A++ L QT +RAP
Sbjct: 123 TANLNVKAMQASVDAAQ-------------------------ATLKQAQWQLAQTEIRAP 157

Query: 224 TDGYVTQLALRPGMMSVPLPLAPVMTFVHTEEKIYTAAFRQNSLQRLQPGFAAEFMFRAL 283
             G+VT L  R G         P+   V +        F +  L+ ++ G  A+    + 
Sbjct: 158 VSGWVTNLTTRIG--DYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYS- 214

Query: 284 PGKVFKGEVIEVLPAIGESQIQARGALL 311
             K  +G V  +  AI +  +++  +L+
Sbjct: 215 DNKTLQGHVSSIGRAIYDQSVESDSSLI 242