Pairwise Alignments

Query, 1084 a.a., protease from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., Tol-Pal system beta propeller repeat protein TolB from Variovorax sp. SCN45

 Score = 66.2 bits (160), Expect = 4e-15
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 4/102 (3%)

Query: 45  ALSPDGQKIAFTYA----GQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100
           A +PDG  +A T +     Q++ +PA GG+   LT+S      P +S D  +I F +DR 
Sbjct: 226 AWAPDGNSLAVTLSRDGGSQLFTIPASGGEPRRLTQSSSIDTEPAFSADGSTIYFVSDRG 285

Query: 101 GLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSR 142
           G   ++ +S  GG   R+T+ G  +I  A S DG+ L + SR
Sbjct: 286 GAPQIYKMSASGGNPTRVTFSGTYNISPAVSGDGRWLAYISR 327



 Score = 62.4 bits (150), Expect = 6e-14
 Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 13/95 (13%)

Query: 81  SETPIWSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFS 140
           +  P W+PD  S+A T  R G   +F +   GGE RRLT   + D   AFSADG  +YF 
Sbjct: 222 NSAPAWAPDGNSLAVTLSRDGGSQLFTIPASGGEPRRLTQSSSIDTEPAFSADGSTIYFV 281

Query: 141 SRRLGDDKANANVKQGSFMAQLYSVPAAGGREQRV 175
           S R G               Q+Y + A+GG   RV
Sbjct: 282 SDRGG-------------APQIYKMSASGGNPTRV 303



 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 29/218 (13%)

Query: 61  IWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRYGLGDVFILSIQGGESRRL-T 119
           +W+  A G +A A   S     +P WS + Q +A+ +       V++ ++  G+ R L  
Sbjct: 158 LWVADADGENAQAALASPEPIISPCWSSNGQQLAYVSFESRKPVVYVHNVASGQRRLLAN 217

Query: 120 YHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGGREQRVLPIA 179
           + G+   P A++ DG  L  +  R G              +QL+++PA+GG  +R+   +
Sbjct: 218 FKGSNSAP-AWAPDGNSLAVTLSRDGG-------------SQLFTIPASGGEPRRLTQSS 263

Query: 180 ISDL--AISPSHSDILYTNQPSDEQPWRKGALSDATRDIWQWSPLTGKHTQITTFRGEDR 237
             D   A S   S I + +        R GA       I++ S   G  T++T     + 
Sbjct: 264 SIDTEPAFSADGSTIYFVSD-------RGGA-----PQIYKMSASGGNPTRVTFSGTYNI 311

Query: 238 NPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITD 275
           +P  S DG  + Y+S   G+F +            ITD
Sbjct: 312 SPAVSGDGRWLAYISRVGGAFKLHVMELASGNVSAITD 349



 Score = 45.4 bits (106), Expect = 8e-09
 Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 26/182 (14%)

Query: 223 TGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPVR 282
           +G+   +  F+G +  P W+ DG+S+     + G   ++     G EP ++T        
Sbjct: 209 SGQRRLLANFKGSNSAPAWAPDGNSLAVTLSRDGGSQLFTIPASGGEPRRLTQ------- 261

Query: 283 FLSASLQGDLAYGFDGEIWRL---KAGAKQAEKVPVSIRRSAMP--DGRHNVNFNLEATE 337
             S+S+  + A+  DG        + GA Q  K+  S          G +N++       
Sbjct: 262 --SSSIDTEPAFSADGSTIYFVSDRGGAPQIYKMSASGGNPTRVTFSGTYNIS------- 312

Query: 338 MVVAPNAAEVAIVAR----GDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASER 393
             V+ +   +A ++R      ++V+ L SG    ITDT  A+   SF+ +   ++YA++ 
Sbjct: 313 PAVSGDGRWLAYISRVGGAFKLHVMELASGNVSAITDT-SADESPSFAPNSKLIVYATQL 371

Query: 394 EG 395
           +G
Sbjct: 372 QG 373



 Score = 42.0 bits (97), Expect = 9e-08
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 45  ALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100
           A S DG  I F      A QI+ + A GG+   +T SG Y+ +P  S D + +A+ +   
Sbjct: 270 AFSADGSTIYFVSDRGGAPQIYKMSASGGNPTRVTFSGTYNISPAVSGDGRWLAYISRVG 329

Query: 101 GLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFMA 160
           G   + ++ +  G    +T   A + P +F+ + + + ++++  G +        G   A
Sbjct: 330 GAFKLHVMELASGNVSAITDTSADESP-SFAPNSKLIVYATQLQGREALMTTTLDGKIKA 388

Query: 161 QL 162
           +L
Sbjct: 389 RL 390



 Score = 39.3 bits (90), Expect = 6e-07
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 18/164 (10%)

Query: 394 EGSWNLYQSYVNDGGKSFSSSLDIIE----EPVLTTEQDVIQPLYSPNLKRIVY---REN 446
           +G ++   +YV   G  +S  +   +    +  L + + +I P +S N +++ Y      
Sbjct: 139 KGIFSTRIAYVTKAGSRYSLWVADADGENAQAALASPEPIISPCWSSNGQQLAYVSFESR 198

Query: 447 RNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEYI-VTRDRAMSNGDIQLLKF 505
           +  + V+++   +         L ++   + +  W+PD   + VT  R   +G  QL   
Sbjct: 199 KPVVYVHNVASGQR------RLLANFKGSNSAPAWAPDGNSLAVTLSR---DGGSQLFTI 249

Query: 506 DGSEA-PINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDIDDM 548
             S   P  L+QS   +  P FSADG  +Y+++D  G   I  M
Sbjct: 250 PASGGEPRRLTQSSSIDTEPAFSADGSTIYFVSDRGGAPQIYKM 293



 Score = 35.4 bits (80), Expect = 8e-06
 Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 309 QAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEVAIVARGD----VYVVSLLSGL 364
           ++ K  V +   A    R   NF    +    AP+   +A+    D    ++ +    G 
Sbjct: 196 ESRKPVVYVHNVASGQRRLLANFKGSNSAPAWAPDGNSLAVTLSRDGGSQLFTIPASGGE 255

Query: 365 TQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGK---SFSSSLDI 417
            +R+T +   + + +FS+DG  + + S+R G+  +Y+   + G     +FS + +I
Sbjct: 256 PRRLTQSSSIDTEPAFSADGSTIYFVSDRGGAPQIYKMSASGGNPTRVTFSGTYNI 311