Pairwise Alignments
Query, 1084 a.a., protease from Vibrio cholerae E7946 ATCC 55056
Subject, 444 a.a., Tol-Pal system beta propeller repeat protein TolB from Sphingobium sp. HT1-2
Score = 63.9 bits (154), Expect = 2e-14
Identities = 64/234 (27%), Positives = 99/234 (42%), Gaps = 44/234 (18%)
Query: 47 SPDGQKIAF-TYAG---QIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRYGL 102
SPD + I + +Y G +I++ G +TES + P WSPD ++I F+ G
Sbjct: 220 SPDYKSIVYVSYLGSRVRIYVYDIGTGQQRLVTESNNTTFAPRWSPDGRNILFSMAVSGN 279
Query: 103 GDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFMAQL 162
D++ +S QGG RLT D+ ++S DG+Q+ F S R G Q+
Sbjct: 280 TDIYRVSAQGGAPVRLTNSPGIDVGGSYSPDGRQIVFESDRSGGQ-------------QI 326
Query: 163 YSVPAAGGREQRVLPIAISDLAISPSHSDILYTNQPSDEQPWR-KGALSDATR-----DI 216
Y + A G ++R+ SH Y W +G L T+ I
Sbjct: 327 YVMNADGSNQRRI------------SHGGGRYAT-----PEWSPRGDLIAFTKLSGDFKI 369
Query: 217 WQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLSE---QAGSFNVWQQRFDG 267
+P +G + +I T +D P WS +G + + + GS VWQ G
Sbjct: 370 AVMTP-SGDNERILTNGWQDEQPTWSPNGRVLQFFRTTPGRQGSSQVWQVDLTG 422
Score = 39.3 bits (90), Expect = 6e-07
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 15/78 (19%)
Query: 323 PDGRHNVNFNLEATEMVVAPNAAEVAIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSS 382
PDGR N+ F++ A+ D+Y VS G R+T++P + S+S
Sbjct: 265 PDGR-NILFSM--------------AVSGNTDIYRVSAQGGAPVRLTNSPGIDVGGSYSP 309
Query: 383 DGYRLIYASEREGSWNLY 400
DG ++++ S+R G +Y
Sbjct: 310 DGRQIVFESDRSGGQQIY 327
Score = 36.2 bits (82), Expect = 5e-06
Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 29/280 (10%)
Query: 286 ASLQGDLAYGFDGEI-WRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNA 344
A L G+ + FD I + ++G K ++I S + R N A +P+
Sbjct: 165 ARLSGESPF-FDSRIAYIAESGPKDNRVKRLAIMDSDGANHRFITNGQSIALTPRFSPDY 223
Query: 345 AEVAIVA----RGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLY 400
+ V+ R +YV + +G + +T++ +S DG ++++ G+ ++Y
Sbjct: 224 KSIVYVSYLGSRVRIYVYDIGTGQQRLVTESNNTTFAPRWSPDGRNILFSMAVSGNTDIY 283
Query: 401 QSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQ--PLYSPNLKRIVYRENRN-TLKVYDIEQ 457
+ G PV T I YSP+ ++IV+ +R+ ++Y +
Sbjct: 284 RVSAQGGA------------PVRLTNSPGIDVGGSYSPDGRQIVFESDRSGGQQIYVMNA 331
Query: 458 DKTYTLLDAHALYSYFDKDLSYQWSPDSEYIVTRDRAMSNGDIQLLKFDGSEAPINLSQS 517
D + +H Y + +WSP + I +GD ++ S + +
Sbjct: 332 DGSNQRRISHGGGRY----ATPEWSPRGDLIAF---TKLSGDFKIAVMTPSGDNERILTN 384
Query: 518 GFSEFAPQFSADGQWVYWLTDAKGLRDIDDMVVQYDVYGV 557
G+ + P +S +G+ + + G R V Q D+ GV
Sbjct: 385 GWQDEQPTWSPNGRVLQFFRTTPG-RQGSSQVWQVDLTGV 423
Score = 34.3 bits (77), Expect = 2e-05
Identities = 52/238 (21%), Positives = 95/238 (39%), Gaps = 30/238 (12%)
Query: 40 WLRDIALSPDGQKIAFTYAGQIWLVPAQG-GDAVALTESGVYSETPIWSPDSQSIAFTAD 98
+L D+AL + + + A + W A DA+ SG E+P + DS+ IA+ A+
Sbjct: 130 YLYDVALKQELTRQGYVVAPRDWRRAAHKCADAIYARLSG---ESPFF--DSR-IAYIAE 183
Query: 99 RYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSF 158
+ +RL + + F +GQ + + R D K+ V
Sbjct: 184 S---------GPKDNRVKRLAIMDSDGANHRFITNGQSIALTPRFSPDYKSIVYVSYLGS 234
Query: 159 MAQLYSVPAAGGREQRVLPIAISDLAI--SPSHSDILYTNQPSDEQPWRKGALSDATRDI 216
++Y G+++ V + A SP +IL++ S DI
Sbjct: 235 RVRIYVYDIGTGQQRLVTESNNTTFAPRWSPDGRNILFSMAVS------------GNTDI 282
Query: 217 WQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQIT 274
++ S G ++T G D +S DG + + S+++G ++ DGS +I+
Sbjct: 283 YRVSAQGGAPVRLTNSPGIDVGGSYSPDGRQIVFESDRSGGQQIYVMNADGSNQRRIS 340
Score = 30.8 bits (68), Expect = 2e-04
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 223 TGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPV 281
TG+ +T P WS DG ++ + +G+ ++++ G PV++T+ + V
Sbjct: 245 TGQQRLVTESNNTTFAPRWSPDGRNILFSMAVSGNTDIYRVSAQGGAPVRLTNSPGIDV 303