Pairwise Alignments

Query, 1084 a.a., protease from Vibrio cholerae E7946 ATCC 55056

Subject, 1067 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score = 64.3 bits (155), Expect = 5e-14
 Identities = 97/408 (23%), Positives = 155/408 (37%), Gaps = 44/408 (10%)

Query: 16  LCAIPNLGFASSNQTEDSTQA------RPTWLRDIALSPDGQKIAFTYAGQIWLVPAQGG 69
           LCA P L   S   +   T+         TW++   +SPDG+ I F   G I+ + A GG
Sbjct: 14  LCAHPALAQDSKGLSLTPTRTLRYDAHEATWMQP-DMSPDGRTILFDLLGDIYALDAGGG 72

Query: 70  DAVALTESGVYSETPIWSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDI--P 127
            A  L     +   P++SPD +  AF +DR G+ +++I ++ G   ++L+   +  I   
Sbjct: 73  TARPLLTGMAFERNPVFSPDGKQFAFLSDRSGVTNLWIANVDGTGLKQLSQDQSLAIYSS 132

Query: 128 YAFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGGREQRVLPIAISDLAISP 187
            A+S DG+ +Y  SR +    A               +  AG  +     +       +P
Sbjct: 133 PAWSPDGRSVYV-SRTVHSILAFELFMYDRDGGSGIQITKAGSPDNWDAKMNAMGAVATP 191

Query: 188 SHSDILYTNQPSDEQPWRKGAL---SDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSAD 244
               + Y  +      W +  L   S A RD+      +G+   I    G    P  S D
Sbjct: 192 DGRYLYYATKRG--HTWTENDLPNWSIARRDL-----KSGQDETIIQSAGGAMRPALSHD 244

Query: 245 GSSMYYLSEQAGSFNVWQQRFDGSEPVQIT-----------DHQKLPVRFLSASLQGDLA 293
           G  + Y S Q     +  +  +  E   I             +  L  RF  + L GD A
Sbjct: 245 GKLLAYASRQGQKDGLRLRNLETGEDRWIAFPIDRDGQDGGYYADLLPRF--SFLPGDKA 302

Query: 294 --YGFDGEIWRLKAGAKQAEKV----PVSIRRSAMPDGRHNVNFNLEATEMVVA----PN 343
                 G I RL   + +   +    PV +    +   R           +V A    P+
Sbjct: 303 MLMSVGGGIRRLDIASGKISDIPFTAPVQLGLGPLTRVRQTEETGPVRVRVVQAPRQSPD 362

Query: 344 AAEVAIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYAS 391
              VA  A G +YV  L + +T +     +A +  S+S DG  + Y S
Sbjct: 363 GGSVAFTALGGLYVQKLTANMTPKRIVAADAFQP-SWSPDGKSIAYVS 409



 Score = 52.0 bits (123), Expect = 2e-10
 Identities = 52/188 (27%), Positives = 70/188 (37%), Gaps = 55/188 (29%)

Query: 37  RPTWLRDIALSPDGQKIAFTY-----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQ 91
           +P+W      SPDG+ IA+        G +W +PA GG    LT+   Y   PI++PD +
Sbjct: 395 QPSW------SPDGKSIAYVSWTAKDGGHVWTIPATGGTPRRLTQIPAYYSQPIFTPDGK 448

Query: 92  S-IAFTADRYGL------------GDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLY 138
             +A  A++Y               D+  +   GG + RL  H        F  D   LY
Sbjct: 449 GVVALRANQYDRLRTASEIDPARPTDIIHMPASGG-AARLVAHAMGARQPQFGKDRDTLY 507

Query: 139 FSSRRLGDDKANANVKQGSFMAQLYSVPAAGGREQRVL-------------PIAISDLAI 185
           F                      L SVP AGG  Q +L             P  + DL I
Sbjct: 508 FYG-----------------AGGLSSVPLAGGDPQPLLRVLAHGLGQYFPGPAPVEDLRI 550

Query: 186 SPSHSDIL 193
           SP  S  L
Sbjct: 551 SPDGSRAL 558



 Score = 44.3 bits (103), Expect = 5e-08
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 8/151 (5%)

Query: 29  QTEDSTQARPTWLRDIALSPDGQKIAFTYAGQIWLVPAQGGDAVALTESGVYSE---TPI 85
           QTE++   R   ++    SPDG  +AFT  G +++          +T   + +     P 
Sbjct: 342 QTEETGPVRVRVVQAPRQSPDGGSVAFTALGGLYVQKLTAN----MTPKRIVAADAFQPS 397

Query: 86  WSPDSQSIAFTA-DRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRL 144
           WSPD +SIA+ +      G V+ +   GG  RRLT   A      F+ DG+ +       
Sbjct: 398 WSPDGKSIAYVSWTAKDGGHVWTIPATGGTPRRLTQIPAYYSQPIFTPDGKGVVALRANQ 457

Query: 145 GDDKANANVKQGSFMAQLYSVPAAGGREQRV 175
            D    A+    +    +  +PA+GG  + V
Sbjct: 458 YDRLRTASEIDPARPTDIIHMPASGGAARLV 488



 Score = 34.7 bits (78), Expect = 4e-05
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 334 EATEMV--VAPNAAEVAIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYAS 391
           EAT M   ++P+   +     GD+Y +    G  + +      ER+  FS DG +  + S
Sbjct: 41  EATWMQPDMSPDGRTILFDLLGDIYALDAGGGTARPLLTGMAFERNPVFSPDGKQFAFLS 100

Query: 392 EREGSWNLYQSYVNDGG---KSFSSSLDIIEEP 421
           +R G  NL+ + V+  G    S   SL I   P
Sbjct: 101 DRSGVTNLWIANVDGTGLKQLSQDQSLAIYSSP 133