Pairwise Alignments

Query, 1084 a.a., protease from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., translocation protein TolB precursor (NCBI) from Escherichia coli BW25113

 Score = 62.4 bits (150), Expect = 7e-14
 Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 4/105 (3%)

Query: 45  ALSPDGQKIAF----TYAGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100
           A SPDG K+AF    T +  ++++    G    +T+    +  P W PDSQ++AFT+D+ 
Sbjct: 250 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA 309

Query: 101 GLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145
           G   V+ ++I GG  +R+T+ G+++     S+DG+ +   S   G
Sbjct: 310 GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG 354



 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 17/142 (11%)

Query: 38  PTWLRDIALSPDGQKIAFTY--AGQIWLV--PAQGGDAVALTESGVYSETPIWSPDSQSI 93
           P  L   A SPDG K+A+    +G+  LV      G    +     ++  P +SPD   +
Sbjct: 199 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 258

Query: 94  AFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANV 153
           AF   + G  +++++ +  G+ R++T   + +    +  D Q L F+S + G        
Sbjct: 259 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG-------- 310

Query: 154 KQGSFMAQLYSVPAAGGREQRV 175
                  Q+Y V   GG  QR+
Sbjct: 311 -----RPQVYKVNINGGAPQRI 327



 Score = 43.9 bits (102), Expect = 2e-08
 Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 26/222 (11%)

Query: 238 NPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFD 297
           +P WS DGS + Y++ ++G   +  Q        Q+    +           G  A+  D
Sbjct: 204 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---------HNGAPAFSPD 254

Query: 298 GEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEVAIVA----RG 353
           G   +L     +   + + +   A    R   +     TE    P++  +A  +    R 
Sbjct: 255 GS--KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 312

Query: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSS 413
            VY V++  G  QRIT      +D   SSDG  ++  S   G  ++ +  +  GG    S
Sbjct: 313 QVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS 372

Query: 414 SLDIIEEPVLTTEQDVIQPLYSPNLKRIVYRENRNTLKVYDI 455
           S  + E P L           +PN   ++Y  ++    V ++
Sbjct: 373 STFLDETPSL-----------APNGTMVIYSSSQGMGSVLNL 403



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 23/146 (15%)

Query: 129 AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGGREQRVLPIAISDLAISPS 188
           A+S DG +L + +   G             + Q+ S P   G             A SP 
Sbjct: 206 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAP-----------AFSPD 254

Query: 189 HSDILYTNQPSDEQPWRKGALSDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSM 248
            S + +          + G+L+    D+      +G+  Q+T  R  +  P W  D  ++
Sbjct: 255 GSKLAFALS-------KTGSLNLYVMDL-----ASGQIRQVTDGRSNNTEPTWFPDSQNL 302

Query: 249 YYLSEQAGSFNVWQQRFDGSEPVQIT 274
            + S+QAG   V++   +G  P +IT
Sbjct: 303 AFTSDQAGRPQVYKVNINGGAPQRIT 328