Pairwise Alignments
Query, 1084 a.a., protease from Vibrio cholerae E7946 ATCC 55056
Subject, 428 a.a., Tol-Pal system protein TolB from Dickeya dianthicola ME23
Score = 62.4 bits (150), Expect = 7e-14
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 45 ALSPDGQKIAFTYAGQ----IWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100
A SPDG K+AF + ++++ G +T+ + P W PDSQ++A+T+D+
Sbjct: 248 AFSPDGSKLAFALSKSGSLNLYVMNLGSGQISPVTDGRSNNTEPTWFPDSQTLAYTSDQA 307
Query: 101 GLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145
G ++ + I GG +RLT+ G+++ S+DG+ L S G
Sbjct: 308 GRPQIYKIGINGGAPQRLTWEGSQNQDAEISSDGKFLVMVSSNGG 352
Score = 43.1 bits (100), Expect = 4e-08
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 23/201 (11%)
Query: 238 NPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITD---HQKLPVRFLSAS-LQGDLA 293
+P WSADGS + Y++ ++G + Q + QI H P S L L+
Sbjct: 202 SPSWSADGSKLAYVTFESGRSALVVQTLANGDIKQIASFPRHNGAPAFSPDGSKLAFALS 261
Query: 294 YGFDGEIWRLKAGAKQAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEVAIVA-- 351
++ + G+ Q S + DGR N TE P++ +A +
Sbjct: 262 KSGSLNLYVMNLGSGQI---------SPVTDGRSN------NTEPTWFPDSQTLAYTSDQ 306
Query: 352 --RGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGK 409
R +Y + + G QR+T +D SSDG L+ S G+ ++ + + GG
Sbjct: 307 AGRPQIYKIGINGGAPQRLTWEGSQNQDAEISSDGKFLVMVSSNGGAQHIAKQDLVTGGV 366
Query: 410 SFSSSLDIIEEPVLTTEQDVI 430
+ + E P + +I
Sbjct: 367 QVLTDTFLDETPSIAPNGTMI 387
Score = 38.9 bits (89), Expect = 8e-07
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 23/142 (16%)
Query: 38 PTWLRDIALSPDGQKIAFTY--AGQIWLV--PAQGGDAVALTESGVYSETPIWSPDSQSI 93
P+W S DG K+A+ +G+ LV GD + ++ P +SPD +
Sbjct: 203 PSW------SADGSKLAYVTFESGRSALVVQTLANGDIKQIASFPRHNGAPAFSPDGSKL 256
Query: 94 AFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANV 153
AF + G +++++++ G+ +T + + + D Q L ++S + G
Sbjct: 257 AFALSKSGSLNLYVMNLGSGQISPVTDGRSNNTEPTWFPDSQTLAYTSDQAG-------- 308
Query: 154 KQGSFMAQLYSVPAAGGREQRV 175
Q+Y + GG QR+
Sbjct: 309 -----RPQIYKIGINGGAPQRL 325
Score = 35.4 bits (80), Expect = 9e-06
Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 23/146 (15%)
Query: 129 AFSADGQQLYFSSRRLGDDKANANVKQGSFMAQLYSVPAAGGREQRVLPIAISDLAISPS 188
++SADG +L + + G + Q+ S P G A SP
Sbjct: 204 SWSADGSKLAYVTFESGRSALVVQTLANGDIKQIASFPRHNGAP-----------AFSPD 252
Query: 189 HSDILYTNQPSDEQPWRKGALSDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSM 248
S + + S G+L+ ++ + +G+ + +T R + P W D ++
Sbjct: 253 GSKLAFALSKS-------GSLN-----LYVMNLGSGQISPVTDGRSNNTEPTWFPDSQTL 300
Query: 249 YYLSEQAGSFNVWQQRFDGSEPVQIT 274
Y S+QAG +++ +G P ++T
Sbjct: 301 AYTSDQAGRPQIYKIGINGGAPQRLT 326
Score = 35.0 bits (79), Expect = 1e-05
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 352 RGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSF 411
R + V +L +G ++I P +FS DG +L +A + GS NLY + G S
Sbjct: 221 RSALVVQTLANGDIKQIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNLGSGQIS- 279
Query: 412 SSSLDIIEEPVLTTEQDVIQPLYSPNLKRIVYRENR 447
PV + +P + P+ + + Y ++
Sbjct: 280 ---------PVTDGRSNNTEPTWFPDSQTLAYTSDQ 306
Score = 34.3 bits (77), Expect = 2e-05
Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 17/188 (9%)
Query: 224 GKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPVRF 283
G QI +F + P +S DGS + + ++GS N++ + +TD +
Sbjct: 232 GDIKQIASFPRHNGAPAFSPDGSKLAFALSKSGSLNLYVMNLGSGQISPVTDGRSNNTEP 291
Query: 284 LSASLQGDLAYGFDGEIWRLKAGAKQAEKVPVS----IRRSAMPDGRHNVNFNLEATEMV 339
LAY D +AG Q K+ ++ R + + + + +V
Sbjct: 292 TWFPDSQTLAYTSD------QAGRPQIYKIGINGGAPQRLTWEGSQNQDAEISSDGKFLV 345
Query: 340 VAPNAAEVAIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNL 399
+ + +A+ D L++G Q +TDT + S + +G +IY+S ++G ++
Sbjct: 346 MVSSNGGAQHIAKQD-----LVTGGVQVLTDT-FLDETPSIAPNGTMIIYSS-KQGLGSV 398
Query: 400 YQSYVNDG 407
Q DG
Sbjct: 399 LQLVSTDG 406
Score = 31.6 bits (70), Expect = 1e-04
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 83 TPIWSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSR 142
+P WS D +A+ G + + ++ G+ +++ + AFS DG +L F+
Sbjct: 202 SPSWSADGSKLAYVTFESGRSALVVQTLANGDIKQIASFPRHNGAPAFSPDGSKLAFALS 261
Query: 143 RLG 145
+ G
Sbjct: 262 KSG 264
Score = 27.7 bits (60), Expect = 0.002
Identities = 34/178 (19%), Positives = 72/178 (40%), Gaps = 20/178 (11%)
Query: 371 TPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVI 430
+PE S+S+DG +L Y + G L + +G DI + + + +
Sbjct: 196 SPEPLMSPSWSADGSKLAYVTFESGRSALVVQTLANG--------DI--KQIASFPRHNG 245
Query: 431 QPLYSPNLKRIVYRENRN---TLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQWSPDSEY 487
P +SP+ ++ + +++ L V ++ + + D + + W PDS+
Sbjct: 246 APAFSPDGSKLAFALSKSGSLNLYVMNLGSGQISPVTDGRS------NNTEPTWFPDSQT 299
Query: 488 IVTRDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLTDAKGLRDI 545
+ I + +G AP L+ G + S+DG+++ ++ G + I
Sbjct: 300 LAYTSDQAGRPQIYKIGINGG-APQRLTWEGSQNQDAEISSDGKFLVMVSSNGGAQHI 356