Pairwise Alignments

Query, 624 a.a., DUF839 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., transcriptional initiation protein Tat from Pseudomonas simiae WCS417

 Score =  743 bits (1918), Expect = 0.0
 Identities = 363/632 (57%), Positives = 445/632 (70%), Gaps = 17/632 (2%)

Query: 5   DEQESQFSEMIEAQLSRRHFLAGSAAVSAGAFLALNPV---ASAVAAPATSNLLNFSAIP 61
           + Q +   +M+   L+RR F+   A   A  FL  N +   A AV A + S LL F++I 
Sbjct: 6   ENQATDLEQMVG--LTRRRFIGAGALCGAAMFLGGNLLTRSALAVNAASASPLLGFTSIA 63

Query: 62  VSTEDKVIVPKGYKATPLMSWGDPIFANAPEFDQSGKQDSKAQEKQFGDNTDGMSFF--P 119
            +T D + +P GY A+ L+SWG P+  +AP FD SG   +KAQE+QFGDN DGMS F  P
Sbjct: 64  AATSDAITLPPGYSASVLISWGQPLSKSAPAFDPSGNGTAKAQEQQFGDNNDGMSLFAFP 123

Query: 120 ISEDRGVLAINNEYTNYEYLFDHQGKAMTADDVRKAQAAVGVTIVEVVRKNGQWMVDRQG 179
             ++R ++AINNEYTNY YLF H G   +A+DV KAQA+ GV+++EV RK   W   +  
Sbjct: 124 GDDNRALMAINNEYTNYRYLFAHGGAPQSAEDVHKAQASEGVSVIEVRRKGDTWQFVQDS 183

Query: 180 ERNRRITAYTPMMMTGPAAGHDLLKTAEDPSGLKVLGTFNNCANGETPWGTYLTCEENFD 239
             NRRI   +P+ ++GPAAGHD LKT+ D SG K LGTF NCANG+TPWGTYLTCEENF 
Sbjct: 184 RYNRRIHGNSPIRLSGPAAGHDWLKTSADKSGKKALGTFQNCANGKTPWGTYLTCEENFT 243

Query: 240 DFFGADQ-EGSVDADQKRYGIAAEPSDYQWHKHDARFDITKNPKEPNRFGWVVEIDPHNP 298
           D FG+   + + DA QKRYG+ A   D  WH+HD RFDI KNP E NR GWVVEIDP +P
Sbjct: 244 DCFGSSNPQQTFDAGQKRYGVVAASKDINWHQHDPRFDIAKNPNELNRHGWVVEIDPFDP 303

Query: 299 NSTPLKRTALGRFKHENAALVINNDGHVVVYLGDDERGEHLYKFVSKHRYQAGNDQQNRN 358
            STP KRTALGRFKHENAAL    DG  VVY+GDDERGE +YKFVS+ +    N + N++
Sbjct: 304 QSTPAKRTALGRFKHENAALAETRDGRAVVYMGDDERGEFIYKFVSRDKINHKNPKANKD 363

Query: 359 LLEEGTLYVAKFDI---NENELKGSGRWMELSFGKNGLTPENGFKDQAEVLIFARRAATQ 415
           LL+ GTLYVA FD    N +  KG G+W+EL+ GKNG+    GF  QAEVLI AR AA+ 
Sbjct: 364 LLDHGTLYVAIFDAGDGNTDHPKGKGQWVELTHGKNGIDASTGFASQAEVLIHARLAASV 423

Query: 416 VGATTMDRPEWVAVHPDKKHVFCTLTNNKNRGKEGQPVGGPNPREKNNYGQIVRWMPAQG 475
           V AT MDRPEW+ V P    V+CTLTNN  RG+EGQPVGGPNPREKN YGQI+RW     
Sbjct: 424 VKATRMDRPEWIVVSPTDGQVYCTLTNNAKRGEEGQPVGGPNPREKNVYGQILRWKADAD 483

Query: 476 DHTSDVFAWDLYLIAGNPTVHKGTLYAGSENISADNMFNSPDGIGFDTAGRLWIQTDGNY 535
           +H +  F WDL+++AGNP VH GT   GS NI+  NMFNSPDG+GFD AGRLWI TDG+Y
Sbjct: 484 NHGASTFTWDLFVVAGNPGVHAGTPKGGSSNINPQNMFNSPDGLGFDKAGRLWILTDGDY 543

Query: 536 SNQGDFAGQGNNQMLCGDPITGEVKRFLTGPIACEITGLTFSPDHKTMFVGVQHPGEEAA 595
           SN GDFAG GNNQMLC DP TGE++RF+ GP+ACE+TG++FSPD KT+FVG+QHPGE   
Sbjct: 544 SNAGDFAGMGNNQMLCADPATGEIRRFMVGPVACEVTGISFSPDQKTLFVGIQHPGETGG 603

Query: 596 ---PSHFPYGGTSKPRSTIMMITREDGGVIGA 624
              P H P G   KPRS++M I R+DGG++GA
Sbjct: 604 STWPEHLPNG---KPRSSVMAIRRDDGGIVGA 632