Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 658 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  135 bits (341), Expect = 4e-36
 Identities = 96/340 (28%), Positives = 167/340 (49%), Gaps = 9/340 (2%)

Query: 172 LSIGFLLVTLIAI---YWLLQRTLIAPLNDLKVLCHALASGSCDLSSRINFRKDNELGQL 228
           L IG +L  L+A+    WLL R+ +APL DL     AL +G  DLS R+N    +E+GQL
Sbjct: 310 LVIGSVLAMLLAVGATVWLL-RSKLAPLGDLVRQAEALGAG--DLSVRLNVSSHDEIGQL 366

Query: 229 ANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHNQQSEISNSVAIGHQS 288
           A + +     + +  + I+    EV   +  +    G     +  Q  EI++      + 
Sbjct: 367 ARSFNQMGEALSTMVSHIRKAAEEVNSRAQALSGLSGGAYEGMEQQSGEITSMAGAVEEF 426

Query: 289 QDSIKAVTESIYAASESLKQAVTSSEDSKAQLREAQTQNQQLVEKAEITTKTATELNTQV 348
             +   + +++ +     ++    +   +  ++EA +  + +      T      L  + 
Sbjct: 427 SATSLNIADNMGSTERLAQENAQQTRIGRNSMQEASSSLEHIAAALNSTATVINTLGQRS 486

Query: 349 EKVTDILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLAEKTSASTNQVE 408
           +++  I+ +I SIAEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +T  +T+++ 
Sbjct: 487 QEIGGIVGVITSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTREATDEIS 546

Query: 409 TLLTQLSGYSRNLIGYMEESLVAARNCV---AAIESGSNLVDKAIIDVNQANSTNQNAVH 465
            ++  +   + N I  ME   V  +  +   A + S    +D+      Q  +    A  
Sbjct: 547 GMIQSIQQETGNAISTMERGNVLMQEGLSRNADVASALARIDEQSRSAGQQFAAITTATQ 606

Query: 466 DSEQQNRLVEQLLEQLRLLDNHARELLTDSATISEHSKEL 505
           +      L+   L+ + L ++  RE++++ A  ++  + L
Sbjct: 607 EQSSTATLLSSNLQSIALANSEQREVVSNLAITAKELETL 646



 Score = 25.4 bits (54), Expect = 0.007
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 40  SAETFEKTSLSLADNIATAVRFNKTSAISERV 71
           + E F  TSL++ADN+ +  R  + +A   R+
Sbjct: 422 AVEEFSATSLNIADNMGSTERLAQENAQQTRI 453