Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  360 bits (925), Expect = e-104
 Identities = 234/698 (33%), Positives = 350/698 (50%), Gaps = 65/698 (9%)

Query: 5   AYSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYQMQLASRVSNLTADQMVDKR 64
           A+++ ++G   E  V   F G ES+S           +R+ ++L S   +L  + ++ ++
Sbjct: 9   AFTLTLDGEPSEFKVFE-FSGIESISQP---------YRFDIELVSEQPDLDLESLLHRQ 58

Query: 65  AELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVP 124
             L      +    VHG+V   +QGD G   T YQ+TLVP L  L    + RIFQ +TVP
Sbjct: 59  VYLGFDDRGR---GVHGLVYRMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVP 115

Query: 125 EILSILLQEMGIHD--YAFALKRDCVQREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAG 182
           +I++ +L+  GI    + F L     +RE+CVQ+ E+D+ F+ RL AE G+ Y F H + 
Sbjct: 116 QIVAQVLEGQGIQRDRFEFRLSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSA 175

Query: 183 KHTLYFSDASDSLSKLPEPIPYNALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKKPA 242
            H L F D      +   P PY   +G   DTP I     + QA  + V L+DY F+KP+
Sbjct: 176 GHLLVFGDDQTVFVQADPPTPYTPGSGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKPS 235

Query: 243 YSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPL 302
            +    V G +L   + +      PG + D  +G   +Q  L+  R     A G  +EP 
Sbjct: 236 LALESEVTGEQLPPLEAQVY----PGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPA 291

Query: 303 LRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEE-----GGSGATTYNNQFSLIP 357
           L +G    L  H     N  W+V  + H+G QPQ L+E      GG     Y N+FS  P
Sbjct: 292 LGSGRFLKLAGHPREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSATP 351

Query: 358 GHLHWRAE--PQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCW 415
               +R     QP+P + G   A V GP   EI CDE+GRVK+   WDR    N+ SSCW
Sbjct: 352 WDAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCW 411

Query: 416 VRVSQGWAGSQYGFIAIPRIGHEVIVSFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKT 475
           +RV+ GWA  +YG + IPR+G EV+V F+NGD D P++ G   +A    P  LP  KT++
Sbjct: 412 LRVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRS 471

Query: 476 VLRTETHQ-GEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQF 534
           V R+++   G G+NEL  ED+ G E+IYL AQ+D+        T  + HD  + V+ +  
Sbjct: 472 VFRSQSSPGGGGYNELRIEDRKGAEEIYLRAQRDW--------TQHVLHDLRVNVDGESH 523

Query: 535 TQIKHNQHLTVEGESRTLVKLDCSSEIGGSLQQKIGSKAIYDAGTEVHLKAGNKLVLEAG 594
            +++  +     G   T +K D    +GGS Q +        AG  + + AG  +V+E G
Sbjct: 524 HELQGEELRITHGNRLTDLKQDDHLMVGGSRQVR--------AGQTIQIGAGQSVVIEGG 575

Query: 595 NELTIKAGGSFIKVDAGGVHVVGSAINLNSGGSAGSGSGYGGKMAELPQGVDKAKTPQEI 654
             +TI+AGG  I + AGG+    S++ +  G +  + +      A L  G+ +       
Sbjct: 576 ATVTIQAGGQSITLCAGGIF---SSVPIQLGSAPAATA------APLTPGLKET------ 620

Query: 655 ELAAVTPTQQSMSPLLKARQIEALKGPAPVCEVCEEAK 692
            + AV P     +PL +  Q+ +LK  AP CE CE  K
Sbjct: 621 -VLAVIP-----APLSRV-QVASLKRSAPFCEECERCK 651