Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  375 bits (963), Expect = e-108
 Identities = 237/690 (34%), Positives = 363/690 (52%), Gaps = 59/690 (8%)

Query: 15  DETLVVRGFHGQESLSNSVFLGQACYGFRYQMQLASRVSNLTADQMVDKRAELKLYRNSQ 74
           D  L V  F G E L    F+          +Q+ S   +L  + ++ + A L      +
Sbjct: 18  DIDLQVLAFKGSEVLDQPFFI---------HIQVVSENPSLDLEALLHQPAYLAF---GE 65

Query: 75  LVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEM 134
               +HG V A  + D G   T Y LTL P L  L+ R + RIFQ+++VP+I++ +L++ 
Sbjct: 66  ADDGLHGQVYAIGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQH 125

Query: 135 GIHDYAFALKRDCV---QREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDA 191
           GI   A+A +   V    R FCVQY ESD+ F+ RL  EEG+ Y F H    H L F D 
Sbjct: 126 GILADAYAFELGPVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDD 185

Query: 192 SDSLSKLPEPIPYNALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQG 251
                +LP    Y+A  G   DTP I     R      +   +DY F+ P+   L    G
Sbjct: 186 QTVFPRLPVQC-YSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVH-LHDSAG 243

Query: 252 TELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDL 311
                    YQ+   P  +     G   ++  L+  +R  + A G+S++P+LR+G+  ++
Sbjct: 244 AASTLPLEDYQY---PAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEI 300

Query: 312 QEHLDPAMNRDWVVVSINHQGEQPQALQEEGGSGATT----YNNQFSLIPGHLHWRAEPQ 367
           ++H DP+ N  W++ S+ H+G QPQ L+E   + AT     Y N+F+  P    W+A  +
Sbjct: 301 RDHPDPSCNDLWLITSVRHEGYQPQVLEE--ATPATDVFQGYRNRFTATP----WQAVHR 354

Query: 368 P-----KPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGW 422
           P     KP ++G   ATV GP GE++ CD +GRVK+ F WDR    +++SSCW+RV+ GW
Sbjct: 355 PSLRHTKPTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGW 414

Query: 423 AGSQYGFIAIPRIGHEVIVSFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETH 482
           AG  +G   IPR+G EV+V+FL+GDPD+P+I G   +A + P Y LP HKT++VLR+ + 
Sbjct: 415 AGDGFGATMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRSSSS 474

Query: 483 -QGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQFTQIKHNQ 541
             GEG NEL  ED+ G+E +YL AQ+D +  I +D    +  ++   +     T +K  +
Sbjct: 475 LGGEGSNELYLEDRRGEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTHLKSEE 534

Query: 542 HLTVEGESRTLVKLDCSSEIGGSLQQKIGSKAIYDAGTEVHLKAGNKLVLEAGNELTIKA 601
           H  V G+ + L+K     ++ G  +  +    + +AG ++HLK+G  LV++AG EL++KA
Sbjct: 535 HRQVTGDRKVLLKASDYLDVHGDSRTHVAQTLVIEAGQQLHLKSGASLVIDAGAELSLKA 594

Query: 602 GGSFIKVDAGGVHVVGSAINLNSGGSAGSGSGYGG-KMAELPQGVDKAKTPQEIELAAVT 660
           GG  + + AGG+    S+  +  GGSA      G  ++A +P            E++ V 
Sbjct: 595 GGEHLVIQAGGIF---SSRPIALGGSASVTQLAGAFRVAGMP------------EVSKVQ 639

Query: 661 PTQQSMSPLLKARQIEALKGPAPVCEVCEE 690
            T  ++     ARQ+ A     PVCE C E
Sbjct: 640 GTIMNL-----ARQLGA--DYCPVCEHCRE 662