Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 839 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  258 bits (658), Expect = 1e-72
 Identities = 177/562 (31%), Positives = 270/562 (48%), Gaps = 22/562 (3%)

Query: 44  YQMQLASRVSNLTADQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLV 103
           + ++L    + + A  ++ K A + +       + + GIV  F        H FY + L 
Sbjct: 22  FDVELLGNSNTIDAKALLGKAATVSMQTGHGGTRHLAGIVTRFGLAREDARHAFYAMRLR 81

Query: 104 PALERLSLRHNSRIFQKQTVPEILSILLQEMGIHDYAFALKRDCVQREFCVQYRESDIDF 163
           P     + RH+ RIFQ + VPEI++ +L+  G H +   L R+     +CVQY ESD DF
Sbjct: 82  PWFWLATKRHDYRIFQDRGVPEIVAEVLERYG-HPFEQKLSRNYRNWTYCVQYGESDFDF 140

Query: 164 LHRLAAEEGLVYSFVHEAGKHTLYFSD-ASDSLSKLP-------EPIPYNALAGGTMDTP 215
           + RL   EG+ Y   HEA +H L F+D  ++S S LP        P   + + GG     
Sbjct: 141 VSRLCEHEGIYYYVRHEATQHVLVFADDIANSHSPLPGGETVRYHPHEQSGMTGGEEPAE 200

Query: 216 YIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVN 275
            I+      +         DY F+KP    L++ +     +    ++ F+ PG Y  + +
Sbjct: 201 RIYAWETGEELRSGRYGSDDYDFEKPKAD-LKSRRQMPPGHDHDDHEVFEWPGHYLLNSD 259

Query: 276 GAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWVVVSIN-HQGEQ 334
           G A++Q R + L    + A G+SN   L  G+   L  H   A NR ++++ +  H  E 
Sbjct: 260 GDAYAQTRNEELLSARNQAHGRSNLRSLAPGHTLRLAGHPCEAQNRQYLLLGVAYHLQEN 319

Query: 335 PQALQEEGG-SGATTYNNQFSLIPGHLHWRA-EPQPKPQVDGPMIATVVGPEGEEIFCDE 392
            +A +  G  SG +     F   P  + WRA    PKP+  GP  A VVGP G EI+ D+
Sbjct: 320 LRATEGTGDTSGGSIQRFAFDAQPTSMAWRAPRTTPKPRTGGPQTAVVVGPAGHEIWTDQ 379

Query: 393 HGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVSFLNGDPDQPI 452
           HGR+K+ F WDR    +E +SCW+RVS GWAG  +G  A+PRIG EV+V FL+GDPD PI
Sbjct: 380 HGRIKVRFRWDRLGRADENASCWLRVSHGWAGGHFGTAALPRIGQEVVVDFLDGDPDHPI 439

Query: 453 ITGRTYHATNTPPYTLPEHKTKTVLRTETHQGE-GFNELSFEDQAGKEQIYLHAQKDFDG 511
           + GR ++A   P + LP     T +R+    G    N L  +D AGK Q  L +      
Sbjct: 440 VVGRFHNADAMPAWQLPRETHLTSMRSRELGGSLRGNHLVLDDSAGKVQAQLKSDHQCSS 499

Query: 512 L----IENDHTTVIRHD---QHLTVENDQFTQIKHNQHLTVEGESRTLVKLDCSSEIGGS 564
           L    I     T  R D   Q   +  D    ++  Q L V  E R   +    +++G +
Sbjct: 500 LSLGHIGRIEDTAGRKDDRGQGFELRTDGHGVLRAAQGLLVSTEPRPNARAHV-TDMGET 558

Query: 565 LQQKIGSKAIYDAGTEVHLKAG 586
           + +   ++ +++    + L AG
Sbjct: 559 VARLTQARELHEGMCRMALDAG 580