Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 792 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  232 bits (591), Expect = 6e-65
 Identities = 185/664 (27%), Positives = 298/664 (44%), Gaps = 81/664 (12%)

Query: 44  YQMQLASRVSNLTADQMV----DKRAELKLYRNSQLVQRVHG-IVRAFSQGDIGHHHTFY 98
           Y++ + S+   L A  ++    D   E +    ++ V+   G  VR    G +G +   Y
Sbjct: 35  YELTVLSKSRTLDARDILGRAFDVSIEFEDADGARHVRHCQGHAVRFMRAGHVGRYFE-Y 93

Query: 99  QLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEMGIHDYAFALKRDCV----QREFCV 154
           ++ L      L+ R NSRI Q + V E+L  + ++  I  +      + +     R +CV
Sbjct: 94  RIALRSWFWLLTKRINSRILQDKKVLEVLDAVFEDSPIKRFKKTRADNVIGTHEPRRYCV 153

Query: 155 QYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASD-SLSKLPEPIPYNALAGGTM- 212
           Q++ESD  FL RL  +EG+ Y F       T++ SDASD +  KLP     N +  G   
Sbjct: 154 QHQESDYQFLSRLLEDEGIYYWFDAHDAPGTMHLSDASDLAHDKLPAASTLNFMPAGATE 213

Query: 213 --DTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHFDAPGRY 270
             D      ++ R Q +  +   +D +FK      L+   G     + + ++ F+  G Y
Sbjct: 214 PRDNEISRWISER-QFDTGKYASRDSNFKSIKKK-LEATGGEPDKCELSEFEAFEFAGGY 271

Query: 271 KDDVNGAAFSQIRLDYL--RRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWVVVSI 328
               +     ++R + +  RR  H A   +  P + AG  F  +   D A + D+V+ + 
Sbjct: 272 FSGGDADDKGKLRGEEIGARRQRHFAL--TRWPDVAAGRSFTFKGDPDAARDGDYVIAAC 329

Query: 329 ----NHQGEQP---------------QALQEE----------------------GGSGAT 347
               +H G +                +AL+++                      G +G +
Sbjct: 330 TFVASHSGYEGVPEVGDPVPLDVLLREALEDDAVCADTLPVLRELVAQTPALRAGRNGDS 389

Query: 348 TYNNQFSLIPGHLHWRAEP-QPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYS 406
            +    +++P  + +R     P+ ++ GP  A VVGP+GEEI  D+ GRVK+HF WDRY 
Sbjct: 390 AF--LLTVMPIDVPFRPPRLTPRVRMPGPQSAIVVGPDGEEIHADDFGRVKVHFHWDRYD 447

Query: 407 NGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVSFLNGDPDQPIITGRTYHATNTPPY 466
             NE+S+CWVRVSQ WAG  +G   IPRIG EVIV FLNGDPD+P++ GR Y+     P+
Sbjct: 448 KSNEKSTCWVRVSQPWAGKGWGGYFIPRIGQEVIVDFLNGDPDRPLVIGRVYNDDQPIPF 507

Query: 467 TLPEHKTKTVLRTETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDQH 526
                       T        NE  FED+ G EQ+YLHA+K+ D  +END T  + HD+ 
Sbjct: 508 GSHTQSGFRTRSTPKGSAANCNEFRFEDKKGSEQVYLHAEKNQDIEVENDETHWVGHDRK 567

Query: 527 LTVENDQFTQIKHNQHLTVEGESRTLVKLDCSSEIGGSLQQKIGSKAIYDAGTEVHLKAG 586
            TV++D+   +KH++  TV    +  + ++ +  +G +    IG       G+   +  G
Sbjct: 568 KTVDHDETVHVKHDRTETVGNNEKITIGVNRTESVGNNETISIGVNRTETVGSNETITIG 627

Query: 587 NKLVLEAG-----------------NELTIKAGGSFIKVDAGGVHVVGSAINLNSGGSAG 629
           +   +  G                 NE         I V A     VG++  ++ G +  
Sbjct: 628 SNRTITVGASETATVALQRTHTVGVNETITVGAAQEITVGAVQAVTVGASQTISVGANQS 687

Query: 630 SGSG 633
           S  G
Sbjct: 688 SSIG 691



 Score = 32.0 bits (71), Expect = 1e-04
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 516 DHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGESRTLVKLDCSSEIGGSLQQKIGSKAIY 575
           + T  +   Q +TV   Q   +  +Q ++V     + +  + S ++G +L   +GS    
Sbjct: 653 NETITVGAAQEITVGAVQAVTVGASQTISVGANQSSSIGANRSVDVGANLTTNVGSDEAR 712

Query: 576 DAGTEVHLKAGNKLVLEAGNELTIKAGGSFIKVDAGGVHV 615
             G       G    L  G  L I AG S I +  G   +
Sbjct: 713 SVGKGRSTSVGKDDSLSVGKNLVISAGDS-ISITTGSASI 751