Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  448 bits (1152), Expect = e-130
 Identities = 244/622 (39%), Positives = 348/622 (55%), Gaps = 48/622 (7%)

Query: 42  FRYQMQLASRVSNLTADQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLT 101
           F   ++L S  S++    ++DK A   LY   + ++ VHG+V AFSQG+ G   T Y   
Sbjct: 34  FVLNLELVSYESDIDFGHVLDKPALFTLYSADRPLRHVHGLVSAFSQGETGFCRTRYHAV 93

Query: 102 LVPALERLSLRHNSRIFQKQTVPEILSILLQEMGIHDYAFALKRDCVQREFCVQYRESDI 161
           + P L R  LR N RIFQ++TVP+IL ++ +  GI  +          REFCVQ  E+D+
Sbjct: 94  VEPQLARARLRSNWRIFQQKTVPQILELMFKRQGITRFELKSSAQHQVREFCVQAGETDL 153

Query: 162 DFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKL---------------------PE 200
           DF+HRLAAEEG VY F H A +HTL  +D   S   L                     P+
Sbjct: 154 DFIHRLAAEEGFVYRFEHCARQHTLIVTDRLLSFGLLSRGALKAEDDEALWLDEDDVGPD 213

Query: 201 PIPYNALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTR 260
            + Y+A +GG      +  L Y  Q   +    +DY+F  PAY      Q + + +Q   
Sbjct: 214 KVLYHASSGGDQARACLRRLRYCEQVRTARQVQRDYTFTNPAYRQEHKAQTSGVTHQSLD 273

Query: 261 YQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMN 320
           Y+ FD PGRYK D  G  F++ RL  LR  A  A  Q ++  L+ G  F L  H    +N
Sbjct: 274 YERFDYPGRYKRDAVGKPFTETRLTALRHDACLAEVQGDDVRLQTGLSFTLVGHPREDLN 333

Query: 321 RDWVVVSINHQGEQPQALQEE--GGSGATTYNNQFSLIPGHLHWRAEPQPKPQVDGPMIA 378
             W V+S+ H+G Q  +LQEE  G    T Y N   L+ G   WR  P  KP++DGP +A
Sbjct: 334 VHWRVISLCHEGTQLTSLQEEAAGAEQGTRYVNDALLVQGMAEWRPAPMAKPRIDGPHMA 393

Query: 379 TVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHE 438
           TVVGP GEEI+CDE GRVK+ FPWDR S  NE SSCWV VSQGWAG  +G +AIPRIG +
Sbjct: 394 TVVGPPGEEIYCDEWGRVKVSFPWDRESKNNEFSSCWVWVSQGWAGGSWGSMAIPRIGQD 453

Query: 439 VIVSFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAGK 498
           VIV ++NGDPDQP+ITGRTY     PPY LP+HKT+  ++++TH+G+GFNEL FED+ G+
Sbjct: 454 VIVQYVNGDPDQPMITGRTYCGDQLPPYDLPDHKTRMTIKSQTHKGDGFNELRFEDELGR 513

Query: 499 EQIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGESRTLVK---- 554
           +++++HA++D + +++++ TT+I +D+   VE+D+   I  N+ + V    R  V     
Sbjct: 514 QEVFIHAERDQNNVVKHNETTLIGNDRSERVEHDEVVDIGGNRSVKVGASKRETVALGKV 573

Query: 555 ----LDCSSEIGGSLQQKIGSKAIYDAGTEVHLKAGNKLVLEAGNE-------------- 596
               L  S  +GG+L   +G +A      +  ++ G +L ++A  +              
Sbjct: 574 ESIGLGKSLAVGGALSVMVGLEATEQVALDKRVQVGGQLRVDADEDVSITSHHGHVHIDS 633

Query: 597 ---LTIKAGGSFIKVDAGGVHV 615
              LT+  GG+FIK+  G + +
Sbjct: 634 RTSLTLSCGGAFIKLSDGRIEI 655