Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  441 bits (1133), Expect = e-128
 Identities = 232/600 (38%), Positives = 336/600 (56%), Gaps = 38/600 (6%)

Query: 42  FRYQMQLASRVSNLTADQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLT 101
           FR Q++L S   ++   Q++DK     L++  + ++ VHG+V  FSQG+ G   T Y+  
Sbjct: 35  FRLQLELVSFEDDVDFAQLLDKPVLFTLWQGERPLRYVHGLVSTFSQGETGFDRTRYRAL 94

Query: 102 LVPALERLSLRHNSRIFQKQTVPEILSILLQEMGIHDYAFALKRDCVQREFCVQYRESDI 161
           + P L R  LR N RIFQ++TVP+IL I+L+  G++ Y          REFCVQ  E+D+
Sbjct: 95  VEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGVNAYELKCLDPHQVREFCVQAGETDL 154

Query: 162 DFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKL--------------------PEP 201
           DF+ RLAAEEG+VY F H   +H L  +D   +L ++                    P+ 
Sbjct: 155 DFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQISRGAIKTDDEDEGFHNDDVGPDQ 214

Query: 202 IPYNALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRY 261
           + Y ++ GG    P +  L Y  Q   +    +DY+F  P Y            +Q   Y
Sbjct: 215 VLYRSVGGGDQARPCLRRLRYSEQVRTARQVQRDYTFTHPQYRQEHQAYDNSNTHQSLNY 274

Query: 262 QHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNR 321
           + FD PGRYK D  G  F+  RL  LR  A  A  + ++  L+ G  F L EH    +N 
Sbjct: 275 ERFDYPGRYKRDAVGVPFTATRLTALRHDARIAEVEGDDVRLQPGLSFTLIEHPREDLNV 334

Query: 322 DWVVVSINHQGEQPQALQEEGGSG--ATTYNNQFSLIPGHLHWRAEPQPKPQVDGPMIAT 379
            W  VS++H+G Q  +LQEE       T Y  +  L+PG   WR  P PKP++DGP +AT
Sbjct: 335 HWRTVSVHHEGTQFTSLQEEAADSQQGTRYKQEALLVPGRTEWRPAPLPKPRIDGPHMAT 394

Query: 380 VVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEV 439
           VVGP+GEEI+CD+ GRVK+ FPWDR S  NE SSCWVRVSQGWAG  +G +AIPRIG +V
Sbjct: 395 VVGPKGEEIYCDQWGRVKVSFPWDRESENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDV 454

Query: 440 IVSFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAGKE 499
           I+ ++N DPDQP+ITGRTY     PPY LPEHKT+  ++++TH+GEGFNEL FED+ G++
Sbjct: 455 IIQYVNADPDQPMITGRTYCGNQLPPYDLPEHKTRMTIKSQTHKGEGFNELRFEDELGRQ 514

Query: 500 QIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGESRTLVKLDCSS 559
           ++++HA        E D   +++HD+   V ND+  +++ ++ +++  + R  +  D S 
Sbjct: 515 EVFIHA--------ERDQNNIVKHDETTRVGNDRTERVERDETISIGQDRREDIARDESV 566

Query: 560 EIGGSLQQKIGSKAIYDAGTEVHLKAGNKLVLEAGNEL--------TIKAGGSFIKVDAG 611
            IG +   +IG+      G    +  G   + + GN          T++ GG   +V AG
Sbjct: 567 GIGQNRVHEIGNDDSLSIGRNHRITTGKDRIEQVGNHRQDITKANHTVEIGGHREQVVAG 626