Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 722 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  452 bits (1163), Expect = e-131
 Identities = 229/565 (40%), Positives = 329/565 (58%), Gaps = 24/565 (4%)

Query: 42  FRYQMQLASRVSNLTADQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLT 101
           F  +++L S  +++    ++DK     +    + V+ VHG+V +FSQG+ G + T+Y   
Sbjct: 35  FELELKLISFENDIDFGHLLDKPVLFTILDGERPVRYVHGLVSSFSQGESGFYRTYYHAL 94

Query: 102 LVPALERLSLRHNSRIFQKQTVPEILSILLQEMGIHDYAFALKRDCVQREFCVQYRESDI 161
           + P L R  LR N RIFQ +TVP+IL ++L+  GI  Y      D   REFCVQ  E+D+
Sbjct: 95  VEPQLARARLRSNWRIFQHKTVPQILELMLKRQGIDQYELRASMDHQVREFCVQAGETDL 154

Query: 162 DFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKL----------------------P 199
            F+ RLAAEEG VY F H    H L  +D   SL  +                      P
Sbjct: 155 AFIARLAAEEGFVYRFAHSEKLHKLIITDRLQSLGLISHGAIKADHEDEGFGDDDEPVGP 214

Query: 200 EPIPYNALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQT 259
           + + Y A +GG    P +  L Y  Q   +    +D++F  PAY       G  L++Q  
Sbjct: 215 DSVLYQANSGGDQAIPCLRRLRYSEQVRTARQVQRDHTFTHPAYRQEHRAAGPFLEHQSK 274

Query: 260 RYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAM 319
            Y++FD PGRYK D  G  F++ R+  LR     A  Q ++  L+ G  F L +H    +
Sbjct: 275 DYEYFDYPGRYKRDAVGKPFTENRITALRHDVRIAEVQGDDVRLQPGLSFTLTDHPREDL 334

Query: 320 NRDWVVVSINHQGEQPQALQEE--GGSGATTYNNQFSLIPGHLHWRAEPQPKPQVDGPMI 377
           N  W V +++H+G QP +LQEE  G    T Y  +  L+PG   WR  P PKP+VDGP +
Sbjct: 335 NVHWRVSTVHHEGSQPTSLQEEAAGADQGTRYEQKAVLVPGRTEWRPAPLPKPRVDGPHM 394

Query: 378 ATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGH 437
           ATVVGP GEEI+CDE GRVK+ FPWDR S  NE SSCW+RVSQGWAG  +G +AIPRIG 
Sbjct: 395 ATVVGPPGEEIYCDEWGRVKVSFPWDRESQNNEFSSCWLRVSQGWAGGSWGSMAIPRIGQ 454

Query: 438 EVIVSFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAG 497
           +VI+ ++NGDPDQP+ITGRTY     PPY LP HKT+  ++++TH+G+GFNEL FED+ G
Sbjct: 455 DVIIHYVNGDPDQPMITGRTYCGNQLPPYDLPRHKTRMTIKSQTHKGDGFNELRFEDELG 514

Query: 498 KEQIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGESRTLVKLDC 557
           +E++++HAQ+D + ++++D TT + +D+   V+ND+   I H++  TV  + R  +  D 
Sbjct: 515 QEEVFIHAQRDQNNVVKHDETTQVGNDRKEQVDNDESILIGHDRTETVGNDERITIGQDA 574

Query: 558 SSEIGGSLQQKIGSKAIYDAGTEVH 582
           + +IG +   +I    + + G   H
Sbjct: 575 ALDIGRNHTIRIAKDRVENIGNHRH 599