Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 729 a.a., VgrG protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  263 bits (672), Expect = 2e-74
 Identities = 184/591 (31%), Positives = 289/591 (48%), Gaps = 31/591 (5%)

Query: 50  SRVSNLTADQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHH--HTFYQLTLVPALE 107
           S  +NL    MV K   + +  +    + + G+V A     +GH      Y+L + P ++
Sbjct: 145 SPAANLPLKPMVGKDLCVNIELDGGGKRHISGLVTAARV--VGHEGRSVTYELRMEPWVK 202

Query: 108 RLSLRHNSRIFQKQTVPEILSILLQEMGIHDYAFALKRDCVQ----REFCVQYRESDIDF 163
            L+   + + FQ +TV +IL  +L E     Y + +++  V+    R + VQY E+D DF
Sbjct: 203 LLTHTSDYKAFQNKTVVDILDEVLAE-----YPYPVEKRLVESYPVRTWQVQYGETDFDF 257

Query: 164 LHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKLPE-PIPYNALAGGTMDTPYIHGLTY 222
           L RL  E G+ + F H    HTL  +DA  +    P+ P+      G  +D  +IH +T 
Sbjct: 258 LQRLMQEWGIYWWFEHSEDSHTLVLADAISAHKACPDSPLVEWHQEGLKLDKEFIHTITA 317

Query: 223 RTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQI 282
                  +  L D+ F KP      TV         T Y+H++ PG Y D   G   ++I
Sbjct: 318 NESLRTGQWVLDDFDFTKPRSLLANTVANPRETGHAT-YEHYEWPGDYFDKSEGEMLTRI 376

Query: 283 RLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEEG 342
           R++  R       G  N   L  GY F L+ +    +N++++++       Q  A Q  G
Sbjct: 377 RMEAQRSPGSRVLGGGNIRTLMTGYTFTLENYPTAEVNQEYLLMQ-TLLFVQDNA-QHSG 434

Query: 343 GSGATTYNNQFSLIPGHLHWRAEPQ-PKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFP 401
                T++ +F L P    +R +    KP   GP  A V GP G+EI+ D++GRVK+ F 
Sbjct: 435 QDQHFTFSTRFELHPTREVFRPQRTVSKPHTKGPQSAIVTGPAGQEIWTDQYGRVKVQFG 494

Query: 402 WDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVSFLNGDPDQPIITGRTYHAT 461
           WDRY   +E SSCW+RVS  WAG  +G I IPRIG EV+V F NGDPD PII GRTY+  
Sbjct: 495 WDRYGKMDENSSCWIRVSYPWAGKGFGMIQIPRIGQEVLVDFKNGDPDLPIIVGRTYNQD 554

Query: 462 NTPPYTLPEHKTKTVLRTETHQG--EGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTT 519
             PP+ LP   +++ + + +  G     N L F+D+ G E++  HA+KD +  ++N+ T 
Sbjct: 555 TMPPWGLPGMASQSGIFSHSLYGGPTNGNMLRFDDKTGAEEVKFHAEKDLNTTVKNNETH 614

Query: 520 VIRHDQHLTVENDQFTQIKHNQHLTVEGESRTLVKLDCSSEIGGSLQQKIGSKAIYDAGT 579
            +  D+  T+  ++   I  +++ TV       VKL  +  IG + +         D G 
Sbjct: 615 TVMVDRTKTIIKNETNSIGEDRNTTVTKNDGLSVKLAQTINIGTTYR--------LDVGD 666

Query: 580 EVHLKAGN-KLVLEAGNELTIKAGGSFIKVDAGGVHVVGSAINLN-SGGSA 628
           +  L+ GN  LVL     +    G   +   +  + ++G  I++N  GG+A
Sbjct: 667 QFTLRCGNAALVLHKDGSIEF-CGKQLMLHTSDVMQLIGKGIDMNPDGGTA 716