Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 633 a.a., type VI secretion system tip protein VgrG from Escherichia coli ECRC98

 Score =  432 bits (1110), Expect = e-125
 Identities = 241/590 (40%), Positives = 340/590 (57%), Gaps = 27/590 (4%)

Query: 4   LAYSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYQMQLASR-VSNLTADQMVD 62
           L +++EV+GL  +   V  FH  +SLS+          F   + L S+   +L   Q++D
Sbjct: 5   LRFTLEVDGLPPDAFAVVSFHLTQSLSSL---------FSLDLSLVSQQFLSLEFAQVLD 55

Query: 63  KRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQT 122
           K A L +++   + +RV G+V  F  G+   +   Y + + P L R  LR N RIFQ + 
Sbjct: 56  KMAYLTIWQGDDVQRRVKGVVTWFELGENDKNQMLYSMKVHPPLWRAGLRQNFRIFQNED 115

Query: 123 VPEILSILLQEMGIHDYAFALKRDCVQREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAG 182
           +  IL  +LQE G+ +++         REFCVQY E+D DFL R+AAEEG+ +   H A 
Sbjct: 116 IKSILGTILQENGVTEWSPLFSEPHPSREFCVQYGETDYDFLCRMAAEEGIFFYEEH-AY 174

Query: 183 KHTLYFSDASDSLSKLPEP--IPYNALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKK 240
           K T       D++  LPE   IP+N      + T  I    Y  Q   S V  KDY+FK+
Sbjct: 175 KSTDQSLVLCDTVRHLPESFEIPWNPNTRTEVSTLCISQFRYSAQIRPSSVVTKDYTFKR 234

Query: 241 PAYSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNE 300
           P ++     +G   DYQ+T+Y+ +D PGR+K   +G  F++ +++  R +A TA G S  
Sbjct: 235 PGWAGRFDQEGQHQDYQRTQYEVYDYPGRFKG-AHGQNFARWQMEGWRNNAETARGMSRS 293

Query: 301 PLLRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEEGGSGATTYNNQFSLIPGHL 360
           P +  G +  L  H    +NR+W VV+    GEQPQA+    G+G T   N F++IP   
Sbjct: 294 PEIWPGRRIVLTGHPQANLNREWQVVASELHGEQPQAVPGRRGAG-TALENHFAVIPADR 352

Query: 361 HWRAEPQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQ 420
            WR +P+ KP VDGP  A V GPEGEEIFCDEHGRV++ F WDRY+  ++ SSCW+RV+Q
Sbjct: 353 TWRPQPRLKPLVDGPQSAVVTGPEGEEIFCDEHGRVRVKFNWDRYNPADQDSSCWIRVAQ 412

Query: 421 GWAGSQYGFIAIPRIGHEVIVSFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTE 480
            WAG+ +G +AIPR+G EVIV FLNGDPDQPII GRTYH  N  P +LP  KT+  +R++
Sbjct: 413 AWAGTGFGNLAIPRVGQEVIVDFLNGDPDQPIIMGRTYHQENRTPGSLPGTKTQMTIRSK 472

Query: 481 THQGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQFTQIKHN 540
           T+ G GFNEL F+D  G+EQ+Y+HAQK+ D  + ND TT ++HD   TV+NDQ   I+  
Sbjct: 473 TYMGSGFNELKFDDATGREQVYIHAQKNMDTEVLNDRTTTVKHDHRETVKNDQTVTIQ-- 530

Query: 541 QHLTVEGESRTLVKLDCSSEIGGSLQQKIGSKAIYDAGT---EVHLKAGN 587
                  E   L+ ++   +I G L+  +      D GT    VH+ A N
Sbjct: 531 -------EGNRLLTVEKGHKITGVLKGSLSEDVFQDRGTIAGSVHVDAVN 573