Pairwise Alignments

Query, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 754 a.a., vgrG protein from Agrobacterium fabrum C58

 Score =  246 bits (629), Expect = 2e-69
 Identities = 155/464 (33%), Positives = 233/464 (50%), Gaps = 13/464 (2%)

Query: 98  YQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEMGIH--DYAFALKRDCVQREFCVQ 155
           Y LT+ P +  LS R + RI+  +T  EI+  L  E GI   D +  +     Q  + VQ
Sbjct: 106 YALTIRPQMWLLSRRSDCRIWMDKTAVEIVETLFSEHGIPAPDTSGIISPPPAQH-YSVQ 164

Query: 156 YRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKLPEPIPYNA----LAGGT 211
           + E+D+D+L R   E+GL Y F HE G H L+ +D++      P P         LA G+
Sbjct: 165 FNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVADSASGWLG-PSPAAQGEGTVRLAQGS 223

Query: 212 MDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHFDAPGRYK 271
            D  +I+    R      +    D++F+ P                 T+ + ++ P R K
Sbjct: 224 SDRNHINDWARRFSYVSGQRAGADWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIK 283

Query: 272 DDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPA-MNRDWVVVSINH 330
                    ++R   +        G S   +L AG +F   E   P     + V+V  +H
Sbjct: 284 TVEEAERAQKLRTQSIEADHDRVFGSSTTRILEAGRRFTPFEVAHPEHAYEEHVIVRASH 343

Query: 331 QGEQPQALQEEGGSGATTYNNQFSLIPGHLHWRAEPQPK-PQVDGPMIATVVGPEGEEIF 389
                  L  E  S    Y N F  IP  +        K P+++G  +A V GPEGEEI 
Sbjct: 344 SIVD---LSYETNSNEPEYRNHFEAIPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIH 400

Query: 390 CDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVSFLNGDPD 449
            D++GR+K+ FPWDR +  +   +CWVRVSQ W G  +G   IPRIG EV+V+F++GDPD
Sbjct: 401 PDQYGRIKLWFPWDRKAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPD 460

Query: 450 QPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAGKEQIYLHAQKDF 509
           +P++ G   +  N+ PY LP +KT+ VLR+ +H+G+GFNE++FED+AGKE  + HAQKD 
Sbjct: 461 KPLVIGVVNNPANSVPYDLPANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQ 520

Query: 510 DGLIENDHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGESRTLV 553
              + ND T  I   +  +V  ++  ++  NQ   + G   T+V
Sbjct: 521 TTRVLNDRTKRIDRHEVASVGGNRAVEVSGNQKHEIGGSVNTVV 564



 Score = 27.3 bits (59), Expect = 0.003
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 547 GESRTLVKLDCSSEIGGSLQQKIGSKAIYDAGTEVHLKAGNKLVLEAGNELTIKAGGS-F 605
           G   T+V    S  +G +  ++IG   + + G       G    +  G E  I+ G S F
Sbjct: 662 GIMNTIVSTFKSDSVGVARAEQIGVSKVTNVGQTSLESVGKFKKIAVGEEFVIECGDSKF 721

Query: 606 IKVDAGGVHVVGSAIN 621
           I    G V ++G   N
Sbjct: 722 IMKANGEVIILGKTFN 737