Pairwise Alignments

Query, 172 a.a., type VI secretion system tube protein Hcp from Vibrio cholerae E7946 ATCC 55056

Subject, 161 a.a., Hcp family type VI secretion system effector from Pectobacterium carotovorum WPP14

 Score =  107 bits (266), Expect = 1e-28
 Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 12/166 (7%)

Query: 1   MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPS 60
           M    Y++IEG++QGLI+ G  T +SIG+ +  GH DE+++  F+H+++           
Sbjct: 1   MANYAYMTIEGKSQGLISEGCSTLESIGNRYQVGHTDEIMILAFNHMMS---------ND 51

Query: 61  GQRVHKPFKFTVALNKAVPLLYNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASI 120
           G  VH P      ++K+ PLL  AL+  EK+K V L +YRT+   KQE FF+ ++ +  I
Sbjct: 52  GHAVHNPIILVKPIDKSTPLLAMALNEQEKVK-VLLDFYRTTQHAKQEKFFSIQINDGLI 110

Query: 121 VDIHCEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGTSGSDDW 166
            DI+  MP+  D       ++  +S+ Y+ +TW H  AGTSG   W
Sbjct: 111 SDINLVMPNIIDDGAGLILEH--ISIRYKDVTWTHHKAGTSGYALW 154