Pairwise Alignments

Query, 172 a.a., type VI secretion system tube protein Hcp from Vibrio cholerae E7946 ATCC 55056

Subject, 159 a.a., type VI secretion system tube protein Hcp from Escherichia coli ECRC101

 Score = 81.3 bits (199), Expect = 7e-21
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 14/162 (8%)

Query: 6   YISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPSGQRV- 64
           Y+++ G  QGLI++G  +  SIG+     H D++++ +F H          G    Q V 
Sbjct: 6   YLTLNGDNQGLISSGCSSQPSIGNKAQTAHIDQIMIYEFMH----------GLNRDQNVN 55

Query: 65  HKPFKFTVALNKAVPLLYNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASIVDIH 124
           H        ++KA PLL  A+   E L T +  +YRT+  G  E F+  KL  A I DIH
Sbjct: 56  HHHLTIKKPIDKASPLLGKAICDNE-LLTCDFSFYRTNKFGINELFYKIKLTGAKISDIH 114

Query: 125 CEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGTSGSDDW 166
             + H      +      +VS SY  I W+H +AGTS    W
Sbjct: 115 VSISHI--VVDNSVQPEESVSFSYESIIWEHCSAGTSAYSLW 154