Pairwise Alignments

Query, 921 a.a., HTH-type transcriptional regulator MalT from Vibrio cholerae E7946 ATCC 55056

Subject, 927 a.a., hypothetical protein from Variovorax sp. SCN45

 Score =  119 bits (297), Expect = 1e-30
 Identities = 148/666 (22%), Positives = 262/666 (39%), Gaps = 87/666 (13%)

Query: 31  RLHNAIVRPRVLDLLQHATCYKLVLFRSPAGYGKTTMAAQW----LADKPNLGWYSIDDS 86
           R    +VR  +LD L      + V+ R+PAG+GK+++   W    ++   ++ W  + D 
Sbjct: 16  RSRRLLVRQGLLDRLAAPGARRCVVLRAPAGFGKSSLLLTWQRELVSADTDIAWVRLADV 75

Query: 87  DNDPFRFMNYLLQAINKATHNACPNAQKLAEKRQFSSLHSLFSEVFAEMADYHGECYVVL 146
                 FM  L+ A+      A P       +    ++  L   +   +A    +  +++
Sbjct: 76  PEGDLHFMTALMAALG-GIDAAIPRQAVAHARPDAYAIERLVIALVRGIAAQGRKVVLIV 134

Query: 147 DDYHLIHDETIHEAMRFFLKHMPDNLTLVVTSRSTPPLGTANLRVRDLMIEIGNELLAFD 206
           DD H    E +  A++  +++ P NL  V  S+   P+  A+      ++E+ N+ L F 
Sbjct: 135 DDVHCAQSENVLHALQLLVEYAPPNLLCVFASQDDLPMTLAHAPASKAVLELRNDDLRFS 194

Query: 207 TEETTRFFNQRVSDGIDALTANHLRDYVEGWPSAMQLIALQAQH----QHRTLAQTIESV 262
             E+  +   R+ D +D   A+ +    EGWP+ ++L +   +     Q   L   +   
Sbjct: 195 LPESIDYLCMRLPD-LDERAASAIHRLTEGWPALLRLASADVRRRRGVQSSPLVHGVPDP 253

Query: 263 SHFNHAHLWDYLVEEVFDLLDDETRYFLMQCSVLDHFDDALVSSLTGRDDALAM----IE 318
             F       Y  + VF  L +     L  C+    F+  L + L G     A+    +E
Sbjct: 254 EPFAA-----YFHDHVFSRLSETQLRLLTCCAASTRFNAPLCADLAGAGFTPALCAELLE 308

Query: 319 SLNRFGLFIS---------PLEG------ETNWYRFHNLFAEFLAHQRQARIPQQEQDLQ 363
            L R GL  +         PL+          W+  H L    L  +  AR   +   + 
Sbjct: 309 PLAREGLLSAVPEAHEPPEPLDAPDAAPPRERWWYMHPLLRSVLLTRFAARPEAERLRVH 368

Query: 364 RAAAKAWLEAAAPHQALRHAHLAQDTELLASILSQYGWKMFNQGELEVLEAAINQLSPPQ 423
             A +++      HQA+RHA  A + E  A +  +    +F QG +  + A + QL    
Sbjct: 369 ATACQSFAVRGMHHQAVRHALAAGNRETAARLAERGASALFTQGRMTEMIALVRQLDTQT 428

Query: 424 LYREPKLCMLQAWLAQSQHRYNDVGALLAKAAKEMKALNVELSTKEQGEFNALRAQVAIN 483
           +     L +  AW+  + +R +D     A++ + ++A   +++   +     L   +AI 
Sbjct: 429 IGDNANLALWMAWVELADYRLDD----CARSIELLRAQAGDIAPAMRYRLTLLGCLLAI- 483

Query: 484 QNEPEKAL----------------------------------ELAELALSQLDHTTYR-- 507
           +N+   AL                                  E  +    Q D  T R  
Sbjct: 484 RNDDNDALSRLLPELLAPPPGADDFALAGRRNVLTWLYLHRGEFEQARRIQRDEPTPRVD 543

Query: 508 -SRIVATSVVGEVNHVLGHLSRAL-SMMQQTEKLARQYQVYHQALWALLQQSEILLAQGY 565
              +V T     V   L  LS A+   M + E++ RQ     Q   A   ++E L AQ  
Sbjct: 544 GEPVVGTLFGSLVGRCLVGLSYAVEGQMHRAERIYRQVLSEAQERGARCAEAERLTAQLL 603

Query: 566 VQAAYEVQD--NAFKLIEEQQLHQVPLHEFLLRIRA-QILWCWNRLDEAEQAAYKGLSVL 622
           V+  YE Q    A + I+E    Q+  H+ L+   A +++   NR   A+QAA +    L
Sbjct: 604 VEVLYEQQGPLAAARFIQE----QLGTHDGLIPDTALRMIIVSNR---AQQAAGRWREAL 656

Query: 623 ENHSQS 628
           E+ +Q+
Sbjct: 657 EHLAQA 662



 Score = 36.2 bits (82), Expect = 1e-05
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 858 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANR 905
           LT RE ++  L+     N++IA  L ++  T+K H++N+Y KL+   R
Sbjct: 862 LTLREAEIAELLLQSLPNKKIALTLGLSLDTVKWHLKNIYMKLDAHGR 909