Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  273 bits (698), Expect = 1e-77
 Identities = 178/555 (32%), Positives = 295/555 (53%), Gaps = 19/555 (3%)

Query: 2   SLTIRQRLYILSLVP-LLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQ 60
           +++I +RL+++ +V  L+ +AL M+        L   +  R   + +++     L  Y  
Sbjct: 6   NMSISRRLWLILIVAVLMLLALGMLMLKQIHDDLYQAK--RQQTQHVVQTASGILTFYHG 63

Query: 61  IADTALAPLKARQAPLDDAIAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGDNFMNM 120
           +  T +     R+A    A++ +R +++    Y +  D     ++        G N   +
Sbjct: 64  LETTGVM---TREAAQKQALSAVRGLRYDHDDYFWINDLTPVMIMHPANPKLDGQNLSAI 120

Query: 121 QDTQGNYLIQD--LLKNAKLNQFTTYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTGFYTD 178
           +D  G  +  +  +L  AK      Y +PKPG + P+ K SY      W   IG+G Y D
Sbjct: 121 RDPDGFAVFNEFVILAKAKGAGIVNYRWPKPGAEAPVAKTSYIQLFEPWGWIIGSGVYVD 180

Query: 179 DVDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSISSF 238
           DV AE +    +A           + I L I ++++++  +I RSI+RPL+   N++ + 
Sbjct: 181 DVQAEFSSQVWKA-----------SFIGLAIALVMALLVSLIARSIVRPLQAAVNAMGNI 229

Query: 239 ASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRATQ 298
           ASG++DLT  ++     E  +LS +FN F   L+ ++ ++      + + +  +   ATQ
Sbjct: 230 ASGESDLTRSLDTHGQDEVTQLSRHFNSFTAKLRQVVGQLQVCANALGQSSQELGSNATQ 289

Query: 299 VDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAARS 358
               +  Q ++ E VATA+ E+T   Q+++ NA +AA   +DA+  A      ++++ + 
Sbjct: 290 AHDRSQQQSQQMELVATAINEVTYGVQDVAKNAEHAASEMRDAQAQAQQGQVNIDSSLQQ 349

Query: 359 VQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGRGF 418
           +  L+  ++ A  VI  L  +   I S L VI+ IA+QTNLLALNAAIEAARAGEQGRGF
Sbjct: 350 IDQLSGTISQAVEVIRTLSAESTQIGSVLEVIRSIADQTNLLALNAAIEAARAGEQGRGF 409

Query: 419 AVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAEAL 478
           AVVADEVR LA RTQ+ST +I  MI++L+  S+AAVK +  S   S  T+ +A  A  +L
Sbjct: 410 AVVADEVRLLAQRTQKSTAEIQGMIERLQGHSEAAVKVISDSHSASQMTIEQAGQAGASL 469

Query: 479 QKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQTLN 538
             I  S+  +  +NA IA+AT +Q+ V ++I+Q +   +  S  +A  A Q+   S  L 
Sbjct: 470 TAIGESLRNLNGLNASIASATLQQAHVVEDINQNVTEAAGLSHSTALAAEQSSVASAHLR 529

Query: 539 GRAHELYELVARFKV 553
           G + +L  L+ +FKV
Sbjct: 530 GLSEQLDGLLRQFKV 544