Pairwise Alignments

Query, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  366 bits (940), Expect = e-105
 Identities = 198/559 (35%), Positives = 340/559 (60%), Gaps = 6/559 (1%)

Query: 1   MSLTIRQRLYILSLVPLLTIALSMMYFTFSETRLLSQEQMRNTREAMMEMKQAELKSYLQ 60
           M L+++ ++  L++VP+L  A+ +   T    +  ++ ++  TR+ ++   +A L+SY++
Sbjct: 1   MRLSLKAKVLSLAVVPVLLFAVVISLTTVWILQGQARNEVEETRQRLLNDAKATLQSYVE 60

Query: 61  IADTALAPLKARQAPLDDA-----IAILREIQFGQSGYIFGYDSKGTRLLLGKATNGLGD 115
           +A + + PL    AP D A     + +L    +G+ GY FGYDS+  RL  G + +G+G 
Sbjct: 61  VAMSTIKPLYDAAAPGDTAARAQVVKLLSNTSYGKDGYFFGYDSETIRLFKGNSPDGVGK 120

Query: 116 NFMNMQDTQGNYLIQDLLKNAKLN-QFTTYYFPKPGEQTPLPKLSYSVYLPQWDLTIGTG 174
           +F + +D  G Y+ +DL+K  K    +  Y   +PG+   +PK+ Y+ YLP+WD+ IGT 
Sbjct: 121 SFKDNRDPNGVYVNRDLVKVGKDGTHYLQYSSTQPGQTELVPKMGYTEYLPKWDMVIGTS 180

Query: 175 FYTDDVDAEIAEMEARAEEQLEQGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNS 234
              D ++A++A +EA+ ++++E  L ++ G+ ++++++++ + +++  +I+RPL L   +
Sbjct: 181 VNLDGIEAQVAVVEAKVQKRMEGVLLSILGVAVVLLLVIAAVGMLLANTILRPLHLMKAN 240

Query: 235 ISSFASGDADLTARMEKFSVPEFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQ 294
           +   A+G+ DLT R+   S  E   L+  FNRFV+ +  +++++ ++  Q+    + +S 
Sbjct: 241 LDDIAAGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITEMTSQLTGLVSQVSD 300

Query: 295 RATQVDHLASNQREETEQVATAMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNA 354
           +A + +     QR ET+QVATA+ +M++ AQE++ +A  A+ +A+  +        +V+ 
Sbjct: 301 QAQRSEQAMERQRHETDQVATAINQMSSAAQEVARSAQGASVAAQQTDAEGQAAKRVVDG 360

Query: 355 AARSVQALAEEVADASSVIAKLEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQ 414
           +   + AL  ++  +   +  L+ DV++I S L+VI+ IAEQTNLLALNAAIEAARAGE 
Sbjct: 361 SIAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAAIEAARAGEA 420

Query: 415 GRGFAVVADEVRKLASRTQESTQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAA 474
           GRGFAVVADEVR LASRTQ STQ+I  MI +L+ G++AAV+AM  S      T  +AN A
Sbjct: 421 GRGFAVVADEVRALASRTQTSTQEIQGMIDRLQTGTEAAVEAMRRSSDAGDGTSAQANEA 480

Query: 475 AEALQKIQASIGTIMDMNALIATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGS 534
             +L  +   IGTI  MNA IA+A EEQ+ V +EI++ +  I+      AD      Q S
Sbjct: 481 GASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQTS 540

Query: 535 QTLNGRAHELYELVARFKV 553
           ++L      L +LV +F++
Sbjct: 541 RSLAELGQRLGQLVGQFRI 559