Pairwise Alignments

Query, 239 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 247 a.a., Probable transcriptional regulatory protein YebC from Sphingobium sp. HT1-2

 Score =  137 bits (345), Expect = 2e-37
 Identities = 82/233 (35%), Positives = 123/233 (52%), Gaps = 9/233 (3%)

Query: 8   RKASMAKTQGAKIKVYSKYGKEIYVCAKNGGTDPDMNLSLRHLITKAKKDQVPAHVIEKA 67
           RK +  K + +   ++SK  +EI V AK G  DPDMN  LR  +  AK   +P   I++A
Sbjct: 13  RKGAQDKKRSS---MFSKLSREITVAAKMGMPDPDMNPRLRLAVNAAKAQSMPKDNIQRA 69

Query: 68  LDKASGGAGEDYQPARYEGFGPGGASVIVDCLTDNGNRTYQDVRQCFVKTGAKIGTPGVV 127
           +DKA GG  E+Y+  RYEG+GPGG ++IV+ LTDN NRT  +VR  F K G  +G  G V
Sbjct: 70  IDKAIGGDMENYEEIRYEGYGPGGVAIIVEALTDNRNRTATNVRTAFAKNGGNLGASGAV 129

Query: 128 AHMFDHQAVFQF--QGDDEEAILEALMMADAEVTDIEHEDGVITVFAPNTEFFKVKTALN 185
           +H FD   +  +     D +A+ EA + A A+  D+   +    ++       +V  AL 
Sbjct: 130 SHGFDRLGLITYPASAGDADAVFEAALEAGAD--DVSSNEDEHEIWTAMDALHEVAKALE 187

Query: 186 EAFPDLTLDVEEITFVPQNRTVVSGEDAEKFQKFLDMLDDCDDVQQVYHNADI 238
                   +  ++ + PQ    V   +A    K +D L+D DDVQ V+ N ++
Sbjct: 188 AKLG--PAEGAKLAWKPQTTLEVDEANAATLLKLVDTLEDDDDVQTVWGNYEV 238