Pairwise Alignments

Query, 239 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 248 a.a., Transcriptional regulatory protein PmpR from Pseudomonas sp. RS175

 Score =  151 bits (381), Expect = 1e-41
 Identities = 89/220 (40%), Positives = 127/220 (57%), Gaps = 5/220 (2%)

Query: 21  KVYSKYGKEIYVCAKNGGTDPDMNLSLRHLITKAKKDQVPAHVIEKALDKASGGAGED-Y 79
           K+++K+ +E+ V A+ GG DP  N  LR  + KA    +   +I++A+ + +G    D  
Sbjct: 23  KIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGANMSRDIIDRAIARGAGATEADNV 82

Query: 80  QPARYEGFGPGGASVIVDCLTDNGNRTYQDVRQCFVKTGAKIGTPGVVAHMFDHQAVFQF 139
           +   YEG+GPGG +V+V+C+TDN NRT   VR  F K G  +GT G VA++F+ +    F
Sbjct: 83  EELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKCGGNLGTDGSVAYLFERKGQISF 142

Query: 140 -QGDDEEAILEALMMADAEVTDIEHEDGVITVFAPNTEFFKVKTALNEAFPDLTLDVEEI 198
             G DE+A+ EA + ADA+   + H+DG   VF   + F+ V+ AL EA      D  EI
Sbjct: 143 APGLDEDALTEAALEADADDV-VGHDDGSFDVFTSFSSFYAVRNAL-EAAGFKPADA-EI 199

Query: 199 TFVPQNRTVVSGEDAEKFQKFLDMLDDCDDVQQVYHNADI 238
              P     +  E AEK  K +DML+D DDVQ VY NADI
Sbjct: 200 VMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNADI 239