Pairwise Alignments

Query, 239 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., DNA-binding regulatory protein, YebC/PmpR family from Enterobacter asburiae PDN3

 Score =  162 bits (411), Expect = 4e-45
 Identities = 89/232 (38%), Positives = 135/232 (58%), Gaps = 7/232 (3%)

Query: 8   RKASMAKTQGAKIKVYSKYGKEIYVCAKNGGTDPDMNLSLRHLITKAKKDQVPAHVIEKA 67
           RKA+    +G   K+++K  +E+   A+ GG DP  N  LR  + KA  + +    + +A
Sbjct: 13  RKAAQDAKRG---KIFTKIIRELVTAARLGGGDPASNPRLRAAVDKALSNNMTRDTLNRA 69

Query: 68  LDKASGGAGE-DYQPARYEGFGPGGASVIVDCLTDNGNRTYQDVRQCFVKTGAKIGTPGV 126
           + +  GG  + + +   YEG+GPGG +V+V+CL+DN NRT  +VR  F KTG  +GT G 
Sbjct: 70  IARGVGGDEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFTKTGGNLGTDGS 129

Query: 127 VAHMFDHQAVFQFQGDDEEAILEALMMADAEVTDIEHEDGVITVFAPNTEFFKVKTALNE 186
           VA++F  + V  F+  DE+AI+EA + A AE   +  +DG I V+    E   V+ AL  
Sbjct: 130 VAYLFSKKGVISFEKGDEDAIMEAALEAGAEDV-VTFDDGAIDVYTAWEEMGAVRDALEA 188

Query: 187 AFPDLTLDVEEITFVPQNRTVVSGEDAEKFQKFLDMLDDCDDVQQVYHNADI 238
           A   L  D  E++ +P  +  +  E A K  + +DML+DCDDVQ+VYHN +I
Sbjct: 189 A--GLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGEI 238