Pairwise Alignments

Query, 513 a.a., ATP synthase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., Flagellum-specific ATP synthase FliI from Variovorax sp. SCN45

 Score =  141 bits (355), Expect = 6e-38
 Identities = 121/459 (26%), Positives = 200/459 (43%), Gaps = 64/459 (13%)

Query: 49  QGEMIELPGNRYALALNLERDSV--GAVVMGPYADLREGMKVTGTGRILEVPVGPELLGR 106
           + E++   G+R  L    E   +  GA V      L  G   +G      +PVG  +LGR
Sbjct: 72  EAEVVGFAGDRLFLMSQTEVAGLLPGARVFARPGALEPG--ASGDAHTKRLPVGEGMLGR 129

Query: 107 VVNTLGEPIDGKGPIGAKQTSPVEVIAPGVIDRKSVDQPVQTGYKSVDSMIPIGRGQREL 166
           VV+  G P+DG GP+   +  P+       + R  +D  +  G +++++M+ +GRGQR  
Sbjct: 130 VVDAAGRPLDGLGPLDVARKVPLSSPPINPLSRAPIDSVLDVGVRAINAMLTVGRGQRMG 189

Query: 167 IIGDRQTGKTALAIDAIINQKNSGIYSIYVAIGQKASTIANVVRKLEEHGALKNTIVVVA 226
           +      GK+ L    ++ +  S    +   IG++   + + +        L   +VV A
Sbjct: 190 LFAGSGVGKSVLL--GMMARYTSAEVIVVGLIGERGREVKDFIENTLGEEGLARAVVVAA 247

Query: 227 SASESAALQYLAPYSGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQISLLLRRPPGREAF 286
            A  S  L+         + EYFRDRG+D L++ D L++ A+A R+I+L +  PP  + +
Sbjct: 248 PADNSPLLRLQGAAYATCLAEYFRDRGKDVLLIMDSLTRYAMAQREIALAVGEPPATKGY 307

Query: 287 PGDVFYLHSRLLERAARVNEEYVERFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVI 346
           P  VF     L+ERA   +          + +G+ GS+TA   + ++  D    +  +  
Sbjct: 308 PPSVFARLPALVERAGNGSR---------DAQGRGGSITAFYTVLSEGDDQQDPIADSAR 358

Query: 347 SITDGQIFLQTELFNAGVRPAVDPGISVSRVGGAAQTKIVKKLSGGIRTALAAYRELAAF 406
           +I DG + L   L  AG  PA+D   S+SR                      A   L   
Sbjct: 359 AILDGHVVLSRTLAEAGHYPAIDIEASISR----------------------AMTALIPS 396

Query: 407 AQFSSDLDEATKRQLTHGQKVTELMKQKQYAPMSVFDQALVIFAAERGYLTDVELNKVLD 466
           +QF  D+    K+ L+  Q+  +L+    YAP               G+  D++L+K   
Sbjct: 397 SQF--DVVRRFKQMLSRYQRNRDLISVGAYAP---------------GH--DLQLDK--- 434

Query: 467 FEAALLSYARAHYAELAAQIDKTGAYNDEIEAQLKKLVD 505
              A+  Y R   A L   +D+   Y D I AQL+ L +
Sbjct: 435 ---AIAMYPRIE-AFLQQSMDERTGYEDAI-AQLEHLFE 468



 Score = 24.6 bits (52), Expect = 0.008
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 329 IIETQAGDVSAFVPTNVISITDGQIFLQTELFNAGVRPA----VDPGISVSRVGGAAQTK 384
           +IE   G+   +    V+     ++FL ++   AG+ P       PG       G A TK
Sbjct: 59  LIELPPGNAQRYAEAEVVGFAGDRLFLMSQTEVAGLLPGARVFARPGALEPGASGDAHTK 118