Pairwise Alignments

Query, 513 a.a., ATP synthase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  124 bits (312), Expect = 5e-33
 Identities = 101/399 (25%), Positives = 177/399 (44%), Gaps = 28/399 (7%)

Query: 44  LADVMQGEMIEL-PGNRYALALNLERDSVGAVVMGPYAD---LREGMKVTGTGRILEVPV 99
           L  V  GE+  + PG   A  + +        ++ P+     L  G +V    R  +VPV
Sbjct: 37  LPGVFMGELCCIKPGEELAEVVGINGSKA---LLSPFTSTIGLHCGQQVMALRRRHQVPV 93

Query: 100 GPELLGRVVNTLGEPIDGKGPIGAKQTSPVEVIAPGVIDRKSVDQPVQTGYKSVDSMIPI 159
           G  LLGRV++  G P+DG+  +        + + P  + R+ + QP+ TG +++DS+   
Sbjct: 94  GEALLGRVIDGFGRPLDGR-ELPDVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATC 152

Query: 160 GRGQRELIIGDRQTGKTALAIDAIINQKNSGIYSIYVAIGQKASTIANVVRKLEEHGALK 219
           G GQR  I      GK+ L   A++        ++ V IG++   +   +         K
Sbjct: 153 GEGQRVGIFSAPGVGKSTLL--AMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRK 210

Query: 220 NTIVVVASASESAALQYLAPYSGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQISLLLRR 279
             ++VVA++   A  +  A +    + E+FRD G+  +++ D L++ A A R+I+L    
Sbjct: 211 RCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGE 270

Query: 280 PPGREAFPGDVFYLHSRLLERAARVNEEYVERFTKGEVKGKTGSLTALPIIETQAGDVSA 339
                 +P  VF    RLLER                  G+ GS+TA   +  +  D++ 
Sbjct: 271 TAVSGEYPPGVFSALPRLLERTG---------------MGEKGSITAFYTVLVEGDDMNE 315

Query: 340 FVPTNVISITDGQIFLQTELFNAGVRPAVDPGISVSRVGGAAQTKIVKKLSGGIRTALAA 399
            +   V S+ DG I L   L   G  PA+D   ++SRV     +   ++L+  +R  LA 
Sbjct: 316 PLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLAL 375

Query: 400 YRE---LAAFAQFSSDLDEATKRQLTHGQKVTELMKQKQ 435
           Y+E   L    ++   +D  T + +     +   ++Q +
Sbjct: 376 YQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSK 414