Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., major facilitator transporter from Pseudomonas simiae WCS417

 Score =  184 bits (467), Expect = 4e-51
 Identities = 116/386 (30%), Positives = 199/386 (51%), Gaps = 7/386 (1%)

Query: 8   LVYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDK 67
           ++ L ALS    +A D YLP F  M  AFAT  + I L+L V+  G+ALGQL++G  +D+
Sbjct: 6   ILILGALSAFAPLAIDFYLPGFPAMAKAFATDEKHIQLTLAVYFGGLALGQLIYGPLADR 65

Query: 68  FGHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSV 127
           FG R  L++G+ +FTLAS   AF+ ++  L+  RF+QA+G CA  VI +A+V  +  +  
Sbjct: 66  FGRRGPLLSGVTLFTLASFACAFAPSLEWLIGARFVQALGGCAGMVISRAVVSDKCDAVG 125

Query: 128 SQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIV--LVVSTGLQTNEIA 185
           S ++F+ +M +  L+P LAP  G L+   +GW SIFL L++  ++  + V+ GL     A
Sbjct: 126 SAKVFSQLMLVTGLAPILAPLAGGLMVGLWGWQSIFLALSIFSVMAAIAVAVGLPETFPA 185

Query: 186 EPKTTSIAQDIK---GLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQL-GYQARDIG 241
                 ++  ++    LL  + YLG  +    + A  FAY+ G P +  QL G  A   G
Sbjct: 186 HQPRQPLSGSLRRYAALLSDRVYLGYALTGGISIAGMFAYIAGSPFVFIQLYGVPAEHYG 245

Query: 242 LSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSIWPILA 301
             F      F++   +  + + K G   +L + + ++ L+A  +   +     ++WP+L 
Sbjct: 246 WLFGSNAAGFILVAQVNARLLSKRGPAFLLSRSVWVYLLAALSLLGIASLRTDALWPLLV 305

Query: 302 PFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAMASQAQPV 361
           P  +   + G + P     A+S       +A+ L   +Q  V++ +++LV  +       
Sbjct: 306 PLFICIASLGCILPNTSACAMSGQGARAGSASALLGCIQFGVAAGAASLVGVLHDGTAMP 365

Query: 362 TGIAIVLCTGGLWLGYVLSNRTLREQ 387
             + I LC G L +   +S + L+ +
Sbjct: 366 MAMVISLC-GVLAVTIAMSTQRLQRK 390