Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., major facilitator transporter from Pseudomonas simiae WCS417

 Score =  129 bits (325), Expect = 1e-34
 Identities = 97/366 (26%), Positives = 165/366 (45%), Gaps = 8/366 (2%)

Query: 11  LSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDKFGH 70
           L  ++ +G  A D+YLPA   +  +    P  + +SLTVF V + + QL +G  SD FG 
Sbjct: 12  LGLITAVGPFAIDIYLPALPTLGASLHASPALVQMSLTVFFVIVGVCQLFYGPISDVFGR 71

Query: 71  RNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSVSQQ 130
           +  + AGL++F +AS G A + T+  L+  R +QA G CA  VI +A+V   Y    + +
Sbjct: 72  KPPIYAGLVIFAVASVGCALAPTIETLIAFRALQAFGACAGMVIPRAIVRDLYTGHEAAK 131

Query: 131 LFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEI--AE-- 186
           L A +M ++++SP LAP  G L+   + W  +F  L ++ +  +V T +Q  E   AE  
Sbjct: 132 LMALLMLVMSVSPILAPLAGSLVIALWSWREVFAVLAVVAVACLVMTIVQLPETHPAERR 191

Query: 187 -PKTTSIAQDIKG-LLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQ-LGYQARDIGLS 243
             KT   A    G LL+   ++G  ++     A FF ++   P +  +  G       L 
Sbjct: 192 LGKTLGNAFSSYGALLRDPVFIGLSVVCGFGLATFFVFIGSAPFVYIEYYGLTPTQFSLG 251

Query: 244 FIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSIWPILAPF 303
           F     +F     L  +   ++G   +++  +       A++   + W  S    +   F
Sbjct: 252 FALNAASFFAMSQLTARLTARFGLAPLIRWSVVAVAAVMALLAATTLWVDSLALMMTLLF 311

Query: 304 CLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAMASQAQPVTG 363
                  G + P     +L        +A+ L  ++Q+  ++LS  +V   A        
Sbjct: 312 IGFGFL-GLLLPAAGVLSLEDHGAVAGSASALLGAIQMITAALSMTVVGVFADHTPAPML 370

Query: 364 IAIVLC 369
           I I LC
Sbjct: 371 IGIALC 376