Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Multidrug resistance transporter, Bcr/CflA family from Variovorax sp. SCN45

 Score =  142 bits (358), Expect = 2e-38
 Identities = 99/358 (27%), Positives = 171/358 (47%), Gaps = 13/358 (3%)

Query: 9   VYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDKF 68
           + L  L+ +G  A DMYLPA   +  A    P  +  SL  F + +  GQL+ G  SD F
Sbjct: 13  IVLGLLTTIGPFAIDMYLPALPAIGHALGADPHAMQASLMAFFIAVGAGQLVAGPLSDMF 72

Query: 69  GHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSVS 128
           G R  ++AGL++F LAS G A +  V  L+ LRF+Q +G CA  V  +A+V   Y    +
Sbjct: 73  GRRRPMVAGLVLFMLASIGCALAPDVGVLIALRFLQGLGACACMVTPRAVVRDLYTGPEA 132

Query: 129 QQLFATIMPLVALSPALAPQLGVLLADYFGWHSIF---LTLTLMGIVLVVSTGLQTNEIA 185
            ++ + ++ + ++SP LAP +G  +A+  GW ++F     L L G+ ++++   +T   A
Sbjct: 133 ARMMSLLLMVYSVSPILAPLVGSFVAESVGWRAVFGVVAALGLAGLAMLMAFLPETRPAA 192

Query: 186 EPKTTSIAQDIKG---LLKSKTYLGNVMMFACASAAFFAYLTGMPEIM-AQLGYQARDIG 241
              +++    + G   LL+ + ++    M +   +AFF Y+   P +M A  G   R   
Sbjct: 193 ARLSSNFRSAMAGYGLLLRDRRFMALAFMASFTVSAFFVYVANSPFVMSAHYGVSPRQYA 252

Query: 242 LSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSIWPILA 301
           L F    ++ +         V ++G   VL+  + +   S  ++ V    TL+ I  +  
Sbjct: 253 LLFALNAVSLLALSQANGWLVTRFGIRRVLRTAVMVQAGSIGLLLVL---TLAGIDRLAV 309

Query: 302 PFCLIAV---ANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAMAS 356
              L+ +    NG + P     A+        TA+ L  ++  +  +L  ALVA  A+
Sbjct: 310 MVVLLMIGYGVNGLIVPATFVLAMEGHASLAGTASALIGTMNFAGGALMVALVAPFAN 367