Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., Multidrug resistance transporter, Bcr/CflA family from Variovorax sp. SCN45

 Score =  139 bits (350), Expect = 1e-37
 Identities = 103/382 (26%), Positives = 184/382 (48%), Gaps = 9/382 (2%)

Query: 11  LSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDKFGH 70
           L+ ++  G +A  +++PA  +       G   + +++++++ G+A+GQL++G  +D+FG 
Sbjct: 20  LALVTFSGTLAMHIFVPALPIAAANLGAGIGAMQMTVSLYIFGLAVGQLVYGPLADRFGR 79

Query: 71  RNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSVSQQ 130
           R  L+ GL ++ +A    A +  V  L+  R  QAIG CA  V+ +++V        + +
Sbjct: 80  RPVLLCGLAIYCVAGLAAALAPEVHALITARLFQAIGGCAGLVLGRSIVRDTAEPQEATR 139

Query: 131 LFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEIAEPKTT 190
             A +  +V + P+LAP +G  LA   GW SIF  L  +G+V  + T     E   P   
Sbjct: 140 RLALMNLMVTIGPSLAPLIGGALATALGWRSIFYALFGLGVVGFLFTWRMLPETGAPGAA 199

Query: 191 SIAQDIK----GLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMA-QLGYQARDIGLSFI 245
             A+D+      LL+S  +LG  +   CA+ + +A++   P I   QL   A + G+   
Sbjct: 200 VNARDLARNYGKLLRSPAFLGFSVGGGCATTSMYAFIASAPFIFVDQLHRPAHEAGIYLA 259

Query: 246 PQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSIWPILAPFCL 305
                  +G +L    + +   + ++ +  AL   +A ++  A+     S+  I+A   L
Sbjct: 260 ILVSGVWLGSFLTSHLISRVRVDRLMIRSNALSVAAAFVLLGAALGDHLSVPLIVACMFL 319

Query: 306 IAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAMASQAQPVTGIA 365
             V  G   P  + +A+S   Q   +A+GL    Q++V +L +AL  A      P    A
Sbjct: 320 FTVGAGMASPAALTQAISVNPQVIGSASGLYGFTQMAVGALCTAL--AGMGHRNPALASA 377

Query: 366 IVLCTGGL--WLGYVLSNRTLR 385
           IVL   G+   L + ++ RT R
Sbjct: 378 IVLAGAGIVAQLSFAVALRTQR 399