Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., Multidrug resistance transporter, Bcr/CflA family from Variovorax sp. SCN45

 Score =  139 bits (350), Expect = 1e-37
 Identities = 108/397 (27%), Positives = 184/397 (46%), Gaps = 14/397 (3%)

Query: 5   FFQL-VYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGL 63
           FF++ + L  LS +G  A DMYLPA   +  +       + +SLT F + +  GQLL+G 
Sbjct: 6   FFKMALLLGLLSAIGPFAIDMYLPALPAIGQSLHADIGAVQMSLTAFFLSLGAGQLLYGP 65

Query: 64  ASDKFGHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRY 123
            SD  G +  L AGL++F LAS G A ++ +  L++LRF+Q +G  A   I +A+V   +
Sbjct: 66  ISDMVGRKPPLYAGLVLFALASVGCAVATDIQTLIVLRFVQGLGAAAGMAIPRAVVRDLH 125

Query: 124 PSSVSQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTL---MGIVLVVSTGLQ 180
             + + +L + +M + ++SP LAP  G  +  + GW  +F  +T+    G+ ++V    +
Sbjct: 126 TGTDAARLMSLLMLVFSVSPILAPLAGSAVIAFAGWRGVFWAVTIAAVAGLAMMVKLLDE 185

Query: 181 TNEIAEPKTTSIAQDIKG---LLKSKTYLGNVMMFACASAAFFAYLTGMPEIMA-QLGYQ 236
           T   +E   +S+   +     LL+ + YLG V + + A A FF YL     +M    G  
Sbjct: 186 TRPASERVESSLGSALAAYWLLLRDRHYLGLVFIGSFAMAGFFTYLANSSFVMIDHYGLS 245

Query: 237 ARDIGLSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSI 296
                ++F     AF+          ++YG   ++K  +    ++   +F+       +I
Sbjct: 246 PAMYSVAFGVNAAAFIAASQFTGSLGERYGLVNLVKFGVVCCGVAMVAMFIYFATGGDNI 305

Query: 297 WPILAPFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVA---- 352
           W ++  + + +   G + P     AL        TA+ L  +LQ+   +L+ A+V     
Sbjct: 306 WVLIVLYFIASGFMGLVIPTTGVLALEMHGAIAGTASALLGTLQMLTGALAMAVVGLFTD 365

Query: 353 --AMASQAQPVTGIAIVLCTGGLWLGYVLSNRTLREQ 387
              +   A    G  I L    L LG V S    R Q
Sbjct: 366 GRPLPMVAGMAAGALIALVLTWLTLGGVRSEPAARAQ 402