Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., Multidrug resistance transporter, Bcr/CflA family from Pseudomonas putida KT2440

 Score =  109 bits (273), Expect = 1e-28
 Identities = 81/353 (22%), Positives = 160/353 (45%), Gaps = 11/353 (3%)

Query: 8   LVYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDK 67
           ++ L+AL+ +  ++T++ LPAF  M        +++ L+L+ F +  A  QLL G  +D+
Sbjct: 27  ILLLAALAAISNLSTNIILPAFPEMARQLNVSSQELGLTLSSFFITFAFAQLLVGPLADR 86

Query: 68  FGHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSV 127
           +G +  ++ GL++F + +   A ++T+  L+L R IQAIGVCA AV+ +A+    Y    
Sbjct: 87  YGRKRLVVGGLMIFVVGTFWAANAATLDMLILGRVIQAIGVCAAAVLARAIARDLYEGEN 146

Query: 128 SQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEIAEP 187
             +  +  M   A +P  +P +G +L    GW ++F+ +  M  +L+    L+      P
Sbjct: 147 LARALSLTMIAAATAPGFSPLIGSMLNTTLGWRALFIAVG-MSAILIALFYLRGIGETLP 205

Query: 188 KTTSIAQDIKGLLKSKTYLGNVMMFACASAA-------FFAYLTGMPEIMAQ-LGYQARD 239
               + Q +  +L +   L +  +F   + A        FA     P I+ + +G  +  
Sbjct: 206 AHRRVTQSVPAILIAYGKLASNRLFILPALATSLLMSGLFASFAAAPSILMEGMGLSSLQ 265

Query: 240 IGLSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSIWPI 299
           +GL F          G    +   ++G   +    +A    + A++ V      S  W  
Sbjct: 266 VGLYFAATVFVVFAAGLAAPRLAHRWGSRAITLSGLATACTAGALLLVGPS-NPSLGWYS 324

Query: 300 LAPFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVA 352
           L+   L     G   P+     ++   +    A+ L   L +++ ++S+ +V+
Sbjct: 325 LS-MVLFLWGMGIANPLGTALTMTPFGKEAGLASALLGFLTMAIGAVSTWMVS 376



 Score = 25.8 bits (55), Expect = 0.002
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 7/143 (4%)

Query: 199 LLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQLGYQARDIGLSFIPQTIAFMVGGYLG 258
           +L +K  L    + A ++ +    L   PE+  QL   ++++GL+     I F     L 
Sbjct: 21  VLTAKVILLLAALAAISNLSTNIILPAFPEMARQLNVSSQELGLTLSSFFITFAFAQLLV 80

Query: 259 KKAVQKYGDELVLKQLIALFTL-------SAAMIFVASQWTLSSIWPILAPFCLIAVANG 311
                +YG + ++   + +F +       +A +  +     + +I    A     A+A  
Sbjct: 81  GPLADRYGRKRLVVGGLMIFVVGTFWAANAATLDMLILGRVIQAIGVCAAAVLARAIARD 140

Query: 312 AMYPIVVNRALSSAKQSPATAAG 334
                 + RALS    + ATA G
Sbjct: 141 LYEGENLARALSLTMIAAATAPG 163