Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., Bcr/CflA family multidrug resistance transporter from Pseudomonas putida KT2440

 Score =  188 bits (478), Expect = 2e-52
 Identities = 119/384 (30%), Positives = 199/384 (51%), Gaps = 7/384 (1%)

Query: 8   LVYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDK 67
           ++ L ALS  G +A D YLPAF  M  AFAT  + +  +L  + +G+++GQL +G  +D+
Sbjct: 6   VLILGALSAFGPLAIDFYLPAFPAMAQAFATDEKHVQATLAAYFLGLSIGQLAYGPVADR 65

Query: 68  FGHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSV 127
           FG R  L+ G+ +FTLAS   A++  +  L++ RFIQA+G CA  V+ +A+V  +     
Sbjct: 66  FGRRKPLMFGVTLFTLASLACAYAPNLDTLVVARFIQALGGCAGMVLSRAIVSDKCDPVA 125

Query: 128 SQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLM--GIVLVVSTGLQTN--- 182
           S ++F+ +M ++ L+P LAP LG +L +  GW SIFL L+L   G +L VS GL  +   
Sbjct: 126 SAKVFSQLMLVMGLAPILAPMLGGVLVNLAGWQSIFLALSLFSAGCLLAVSLGLPESLPE 185

Query: 183 EIAEPKTTSIAQDIKGLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQL-GYQARDIG 241
            I     +   +    LL  + +LG+ +    A A  FAY+ G P +  +L G  A   G
Sbjct: 186 HIPRQPLSGALRQYLRLLADRVFLGHALTGGIAIAGMFAYIAGSPFVFIKLYGVPAEHYG 245

Query: 242 LSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSSIWPILA 301
             F      F++   +  + + K G   +L + + L+ ++  ++   +    + +WP+L 
Sbjct: 246 WLFGTNAAGFILVAQVNARLLAKRGPAFLLGRAVWLYLVAGLVLLGVAALRPAQLWPLLV 305

Query: 302 PFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVAAMASQAQPV 361
           P  +   + G + P     A+S       +A+ L   +Q SV++ ++ALV  +   +   
Sbjct: 306 PLFICIASLGCIIPNASACAMSGQGARAGSASALMGCVQFSVAAGAAALVGLLHDGSAVP 365

Query: 362 TGIAIVLCTGGLWLGYVLSNRTLR 385
             I I LC G L +   L  R L+
Sbjct: 366 MAIVISLC-GALVVSVALLTRRLQ 388