Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., Multidrug resistance transporter, Bcr/CflA family from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  124 bits (312), Expect = 4e-33
 Identities = 104/387 (26%), Positives = 172/387 (44%), Gaps = 24/387 (6%)

Query: 8   LVYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGLASDK 67
           ++ LS L  L  IATD+YLPA   + T F     Q  L+LT  L+   L QL+WG  SD+
Sbjct: 7   VLVLSLLLGLQPIATDLYLPALPALTTGFGAPMPQAQLTLTALLLCFGLSQLVWGPLSDR 66

Query: 68  FGHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRYPSSV 127
           FG R  L+ GL  F  AS G  F+ ++ QL++ R +Q   + A  +  +A+V   Y  S 
Sbjct: 67  FGRRPVLLVGLSAFVAASIGSTFAPSMEQLIVWRAVQGAAMGAGVMCARAIVRDLYAPSE 126

Query: 128 SQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNEIAEP 187
             ++ +  +  + +    A  +G LL+D FGW    + L + G V ++   L+  E    
Sbjct: 127 GARVMSKGLTGLGVIACAASPVGGLLSDLFGWRVSLMALAVFGAVALLVVALRFEE---- 182

Query: 188 KTTSIAQDIKGLLKSKTYLGNVMM---------FACASAA----FFAYLTGMPEIMAQ-L 233
              ++AQ     L  +T LGN ++         FA  S A     F +L     +  + L
Sbjct: 183 ---TLAQKNPHALAPRTLLGNWVLIARHPTFWAFALLSTASYGGLFTFLAASSFVFIRVL 239

Query: 234 GYQARDIGLSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVA-SQWT 292
           G      G+     ++ +++G +L +  + + G    +  + A+ TL+A       +   
Sbjct: 240 GLSTTAYGVVMFSMSLVYILGTFLCRALLPRLGLRRTV-AIAAVMTLTAGTSMGGLALLG 298

Query: 293 LSSIWPILAPFCLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSALVA 352
           + + W IL PF L  +A+G   P   + A+    Q+   A+ L   L +  +      + 
Sbjct: 299 VQNTWAILVPFWLFMLAHGVHQPCGQSGAVGPFPQAAGAASALSGFLSMVTAFAMGGWLG 358

Query: 353 AMASQAQPVTGIAIVLCTGGLWLGYVL 379
              +      G  + L T GLW   VL
Sbjct: 359 RSLAGIGEGRGSVLPL-TNGLWFWSVL 384