Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., bicyclomycin/multidrug efflux system (NCBI) from Escherichia coli BW25113

 Score =  117 bits (293), Expect = 6e-31
 Identities = 86/362 (23%), Positives = 169/362 (46%), Gaps = 20/362 (5%)

Query: 4   SFFQLVYLSALSMLGFIATDMYLPAFKMMETAFATGPEQIALSLTVFLVGMALGQLLWGL 63
           SF  +  L  L+ML  ++ DMYLPA  ++   F        ++L+ +++G ALGQL++G 
Sbjct: 8   SFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVPAGSTQMTLSTYILGFALGQLIYGP 67

Query: 64  ASDKFGHRNTLIAGLLVFTLASAGLAFSSTVWQLLLLRFIQAIGVCAPAVIWQAMVIKRY 123
            +D FG +  ++ G LVF  A+   A ++T+ QL+++RF   +   A +V+  A++   Y
Sbjct: 68  MADSFGRKPVVLGGTLVFAAAAVACALANTIDQLIVMRFFHGLAAAAASVVINALMRDIY 127

Query: 124 PSSVSQQLFATIMPLVALSPALAPQLGVLLADYFGWHSIFLTLTLMGIVLVVSTGLQTNE 183
           P     ++ + +M +  ++P +AP +G  +  +  WH IF  L L  I+          E
Sbjct: 128 PKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVWLSWHYIFWILALAAILASAMIFFLIKE 187

Query: 184 IAEPK-------TTSIAQDIKGLLKSKTYLGNVMMFACASAAFFAYLTGMPEIMAQLGYQ 236
              P+        T+I  +   L + K  L  ++    + A  F++L+  P +  ++ + 
Sbjct: 188 TLPPERRQPFHIRTTIG-NFAALFRHKRVLSYMLASGFSFAGMFSFLSAGPFVYIEINHV 246

Query: 237 A-RDIGLSFIPQTIAFMVGGYLGKKAVQKYGDELVLKQLIALFTLSAAMIFVASQWTLSS 295
           A  + G  F    +   V      + V++ G   + +  + +  + AA + +++   L  
Sbjct: 247 APENFGYYFALNIVFLFVMTIFNSRFVRRIGALNMFRSGLWIQFIMAAWMVISALLGL-G 305

Query: 296 IWPI---LAPF--CLIAVANGAMYPIVVNRALSSAKQSPATAAGLQNSLQISVSSLSSAL 350
            W +   +A F  C+  V++ AM  I     L        TA+ L  + +  + ++  AL
Sbjct: 306 FWSLVVGVAAFVGCVSMVSSNAMAVI-----LDEFPHMAGTASSLAGTFRFGIGAIVGAL 360

Query: 351 VA 352
           ++
Sbjct: 361 LS 362