Pairwise Alignments

Query, 354 a.a., nitrogen regulation protein NR(II) from Vibrio cholerae E7946 ATCC 55056

Subject, 899 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

 Score =  105 bits (263), Expect = 4e-27
 Identities = 99/343 (28%), Positives = 157/343 (45%), Gaps = 20/343 (5%)

Query: 18  SVLILDESLMIRYANPAAEQLFSQSAKRLMHQSLNHLVQHSSLDLQLLTQPLQSGQSITD 77
           ++ ++D S  +R AN A E+LF + A     + L  LV   S    LL     + +    
Sbjct: 419 AMALVDRSGGVRAANAAFERLFGRDAAG---RPLTALVSDPSGTEALLAAAAGASEPPAP 475

Query: 78  SDVTLVIDSKPLMLEVTVSPISWHKELLLLAEMRTIGQQRRLTQELNQHAQQQAAKLLVR 137
            DVTL   S    +    +P+    ++ L A   T  +QR L  +  Q  + QA   L  
Sbjct: 476 CDVTLAGGSAR-SVRFYAAPLDPSGDIALCAIDMT--EQRALEVQFAQSQKLQAVGHLAG 532

Query: 138 GLAHEIKNPLGGLRGAAQLL--ERMLPDPALMEYTQIIIEQADRLRGLVDRLLGPQRPGE 195
           G+AH+  N L  + G   LL  +    DP+  +  QI  + A+R  GLV +LL   R   
Sbjct: 533 GVAHDFNNVLTAIIGYCDLLLAKHRPSDPSFPDIMQIK-QNANRAAGLVRQLLAFSRRQT 591

Query: 196 KKWENLHL--ILEKVRQLVELEAGANLVFERDYDPSLPNILMDTDQIEQALLNIVSNAAQ 253
            + + + L  ++     L+    G  +  + ++   L  + +D +Q EQ ++N+  NA  
Sbjct: 592 LRPQVIELGDVISDAAALLRRLIGERITLDVEHARDLWPVKVDVNQFEQVIVNLAVNARD 651

Query: 254 ILTNQTHGVITLRTRTVHQANIHGQRHKL----VASIEIIDNGPGIPPELQDTLFYPMVS 309
            + +   G +T+RT  V  A        L       +E++D G GIPP++ D +F P  S
Sbjct: 652 AMPDG--GTLTIRTGNVPAAGCAAYGQGLPEGDYVMVEVVDTGTGIPPDIMDKIFEPFFS 709

Query: 310 GRE--GGTGLGLSISQNLIDQHQGKIEVQSWPGR-TVFTIYLP 349
            +E   GTGLGLS    ++ Q  G I   S  GR T F ++LP
Sbjct: 710 TKEVGKGTGLGLSTVYGIVQQTGGTILADSEMGRGTTFRVFLP 752