Pairwise Alignments

Query, 354 a.a., nitrogen regulation protein NR(II) from Vibrio cholerae E7946 ATCC 55056

Subject, 860 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score = 90.1 bits (222), Expect = 2e-22
 Identities = 94/374 (25%), Positives = 171/374 (45%), Gaps = 34/374 (9%)

Query: 1   MSVSAELSQTIINNQVTSVLILDESLMIRYANPAAEQLFSQ-SAKRLMHQSLNHLVQ--H 57
           +  S ++  +I++    +++ +D S M+   NPAAE +F + S+  L H+  + ++   H
Sbjct: 353 LEASEQIKSSILDAAQDAIITIDRSGMVVEFNPAAEHIFGRRSSDALGHEIADLIIPEIH 412

Query: 58  SSLDLQLLTQPLQSGQSITDSDVTLVIDS-----KPLMLEVTVSPISWHKELLLLAEMRT 112
                + L + + SGQ+ +     + +         + LE+T++ +  H   L  A +R 
Sbjct: 413 REAHRRGLAR-VASGQASSVLGKRMEMSGLHARGHEIPLELTITHLPDHG--LFTAFIRD 469

Query: 113 IGQQRRLTQELNQHAQQQAAKLLVRGLAHEIKNPLGGLRGAAQLLERMLP-DPALMEYTQ 171
           I +Q++    L +  + +A   L  G+AH+  N LG + G  +LLER +    + M+  Q
Sbjct: 470 ITEQKQTEAALRRSQKMEAVGQLTGGIAHDFNNLLGIITGNLELLERTVQGSESGMKRVQ 529

Query: 172 IIIEQADRLRGLVDRLLG-----PQRPGEKKWENLHLILEKVRQLVELEAGANLVFERDY 226
             +  A R   L  RLL      P+  G+ + +    I   ++++V+      +      
Sbjct: 530 TALRSARRGADLTRRLLSFSRQDPKAQGKSRTDIADAI-SGMQEMVQRSLTKVIEVRTQM 588

Query: 227 DPSLPNILMDTDQIEQALLNIVSNAAQILTNQTHGVITLRTRTVH--------QANIHGQ 278
                +  ++  + E  LLN+  NA   +     GV+T+    V           N+   
Sbjct: 589 AADTWHADINRSEFEDCLLNLCLNARDAMPQ--GGVLTVEASNVEVDDEMRRADPNLTPG 646

Query: 279 RHKLVASIEIIDNGPGIPPELQDTLFYPMVSGRE--GGTGLGLSISQNLIDQHQGKIEVQ 336
           R+ +V+   + D G GIP E+ D +F P  + +E   GTGLGL+++     +  G I V 
Sbjct: 647 RYVVVS---VSDTGTGIPKEIVDRIFEPFFTTKERGKGTGLGLAMAYGFARRSGGHIRVY 703

Query: 337 SWPG-RTVFTIYLP 349
           S PG  T F +YLP
Sbjct: 704 SEPGIGTTFRLYLP 717



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 4   SAELSQTIINNQVTSVLILDESLMIRYANPAAEQLFSQSAKRLMHQSLNHLVQHSSLD 61
           + E +  I+++    ++ LD    + + NPAA ++   +   ++ Q L+ L+ HS  D
Sbjct: 225 AVEHNNLILDSMGEGIIGLDTRGAVTFVNPAASEMLGFAPGEMLGQHLHPLIHHSHPD 282