Pairwise Alignments

Query, 305 a.a., type II secretion system protein GspC from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., General secretion pathway protein C from Sphingobium sp. HT1-2

 Score = 59.7 bits (143), Expect = 8e-14
 Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 40/273 (14%)

Query: 34  LLLVASAWTLGKMVWVVSAEQTPVPTWSPTLSGLKAERQPLDISVLQKGELFGVFTE--P 91
           LLL   A  L ++VWV+    TPV  + P        RQ   +S   +  LF  F     
Sbjct: 28  LLLAVLALQLARLVWVLL---TPVGAFGPWEG-----RQAQLLSASARQALFASFDPFFR 79

Query: 92  KEAPVVEQPVVVDAPKTRLSLVLSGVVASNDAQKSLAVIANR-GVQATYGI-NEVIEGTQ 149
             AP     VV     T L+L L GV  +    +  A++A   G+Q +Y + +E++ G  
Sbjct: 80  TGAPQAGNGVV-----TSLALTLYGVRLNEGTGQGSAILATPDGIQNSYAVGDEIMPGVV 134

Query: 150 AKLKAVMPDRVIISNSGRDETLMLEGLDYTAPATASVSNPP-------RPRPNQPNAVPQ 202
             LKAV+ D V I   G +E + L+     + A      P         P    P+ VP 
Sbjct: 135 --LKAVLFDHVTIDRGGAEEQVFLDQSQPESAAGGPAGGPGGAPEGDMAPGEGAPSPVPG 192

Query: 203 FE-DKVDAIREAIARNPQEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMA 261
            +    DA++  I  +P+            ++ +V G  +SP K P  F++ G Q GD+ 
Sbjct: 193 RDAPSADAVKRDIGFSPRT-----------QNGRVTGLVMSP-KGPG-FQNAGFQAGDIV 239

Query: 262 VALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER 294
             +NG  +     + +L   +     +SLTVER
Sbjct: 240 TQINGQPIGSAGDLASLQNQIVPGARLSLTVER 272