Pairwise Alignments

Query, 305 a.a., type II secretion system protein GspC from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., general secretory pathway component, cryptic (NCBI) from Escherichia coli BW25113

 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 42/198 (21%), Positives = 83/198 (41%), Gaps = 30/198 (15%)

Query: 100 PVVVDAPKTRLSLVLSGVVASNDAQKSLAVIANRGVQATYGINEVIEGTQAK-LKAVMPD 158
           PV V+    +LS+ L+G+V +++ + S  +I     Q  Y +NE +E      ++ +   
Sbjct: 79  PVAVNQETPKLSIALNGIVLTSNDETSFVLINEGSEQKRYSLNEALESAPGTFIRKINKT 138

Query: 159 RVIISNSGRDETLMLEGLDYTAPATASVSNPPRPRPNQPNAVPQFEDKVDAIREAIARNP 218
            V+    G  E + L                    P  P          D I++  + + 
Sbjct: 139 SVVFETHGHYEKVTL-------------------HPGLP----------DIIKQPDSESQ 169

Query: 219 QEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTL 278
             +  Y+  + ++  +++ G R++P K    F +  LQ GD+A+ +N L LT P+ ++  
Sbjct: 170 NVLADYIIATPIRDGEQIYGLRLNPRKGLNAFTTSLLQPGDIALRINNLSLTHPDEVSQA 229

Query: 279 FQSMNEMTEMSLTVERDG 296
              +        T+ R+G
Sbjct: 230 LSLLLTQQSAQFTIRRNG 247