Pairwise Alignments

Query, 305 a.a., type II secretion system protein GspC from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., type II secretion system protein GspC from Dickeya dianthicola ME23

 Score =  134 bits (338), Expect = 2e-36
 Identities = 94/307 (30%), Positives = 146/307 (47%), Gaps = 41/307 (13%)

Query: 1   MEFKQLPPLAAWPRLLSQNTLRWQKPISEGLTLLLLVASAWTLGKMVWVVSAEQTPVPTW 60
           M   +LPPL+                I   L  LL++     L  + W +       P  
Sbjct: 1   MNISKLPPLSP-------------SVIRRILFYLLMLLFCQQLAMIFWRIGLPDN-APVA 46

Query: 61  SPTLSGLKAERQPLDISVLQKGELFGVFTEPKEAPVVEQPVVVDAPKTRLSLVLSGVVAS 120
           S  ++  +A +QP+    L    LFGV  E  +   ++   + + P + L+L L+GV+A 
Sbjct: 47  SVQITPAQARQQPV---TLNDFTLFGVSPEKNKTGALDASQMSNLPPSTLNLSLTGVMAG 103

Query: 121 NDAQKSLAVIANRGVQATYGINEVIEGTQAKLKAVMPDRVIISNSGRDETLMLEGLDYTA 180
           +D  +S+A+I+    Q + G+NE + G  AK+ ++ PD+V++   GR E L L G +   
Sbjct: 104 DDTSRSIAIISKDNEQFSRGVNEEVPGYNAKIVSIRPDKVVLQYQGRYEVLGLYGQE--- 160

Query: 181 PATASVSNPPRPRPNQPNAVP--QFEDKVDAIREAIARNPQEIFQYVRLSQVKRDDKVLG 238
                         N  + VP  Q  +++        R    +  YV  S V  D K+ G
Sbjct: 161 -------------DNGSDGVPGAQLNEQLQQ------RASTTMSDYVSFSPVMNDSKLQG 201

Query: 239 YRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQ 298
           YR++PG     F  +GLQD DMAVALNGLDL D        + M ++   +LTVERDGQ+
Sbjct: 202 YRLNPGPKSDSFYRVGLQDNDMAVALNGLDLRDEEQAKKAMERMADVHNFTLTVERDGQR 261

Query: 299 HDVYIQF 305
            D+Y++F
Sbjct: 262 QDIYMEF 268