Pairwise Alignments

Query, 305 a.a., type II secretion system protein GspC from Vibrio cholerae E7946 ATCC 55056

Subject, 276 a.a., putative secretion pathway protein, C-type protein from Escherichia coli BL21

 Score =  115 bits (287), Expect = 2e-30
 Identities = 77/232 (33%), Positives = 127/232 (54%), Gaps = 10/232 (4%)

Query: 75  DISVLQKGELFGVFTEPKEAPVVEQPVVVDAPKTRLSLVLSGVVASNDAQKSLAVIANRG 134
           D+ ++ +   FG + +P  APV +QP  V   +TRL++VL G+       +  AVI   G
Sbjct: 49  DVQLISQQNWFGKY-QPVAAPV-KQPEPVPVAETRLNVVLRGIAFG---ARPGAVIEEGG 103

Query: 135 VQATYGINEVIEGTQAKLKAVMPDRVIISNSGRDETLMLEGLDYTAPATAS---VSNPPR 191
            Q  Y   E +    A ++ +  D V++   G+ E L L   + +  A  +   VS+  +
Sbjct: 104 KQQVYLQGERLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSDEAK 163

Query: 192 PRPNQPNAVPQFEDKVDAIREAIARNPQEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFE 251
               +P AV    +   A+R+A+A++PQ+IF Y++L+ V+++  ++GY V PG D  LF+
Sbjct: 164 QAVAEP-AVSAPVEIPTAVRQALAKDPQKIFNYIQLTPVRKEG-IVGYAVKPGADRSLFD 221

Query: 252 SIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYI 303
             G ++GD+A+ALN  D TDP  M  L + +  M  + LTV R G +HD+ I
Sbjct: 222 VSGFREGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISI 273