Pairwise Alignments

Query, 305 a.a., type II secretion system protein GspC from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., General secretion pathway protein C from Alteromonas macleodii MIT1002

 Score =  169 bits (429), Expect = 6e-47
 Identities = 105/280 (37%), Positives = 153/280 (54%), Gaps = 15/280 (5%)

Query: 31  LTLLLLVASAWTLGKMVWVVSAEQ----TPVPTWSPTLSGLKAERQPLDISVLQKGELFG 86
           L  L L+A A    K+VW +  E     TP  + +P +S    +   ++I+ +Q+  LFG
Sbjct: 29  LLSLYLIAFA---AKLVWRIIPEPQLSATPTVSRAPVISSSSGQNG-VNIAKIQQLNLFG 84

Query: 87  VFTEPKEAPVVEQPVVVDAPKTRLSLVLSGVVASNDAQKSLAVIANRGVQATYGINEVIE 146
                   PV E   V DAP+TRL+L L+GVVAS++ +   A+I NRG QA YG+ E IE
Sbjct: 85  NAAAKPAEPVAE---VTDAPETRLNLTLTGVVASSEQEAGTAIIENRGSQAVYGLGEKIE 141

Query: 147 GTQAKLKAVMPDRVIISNSGRDETLMLEGLDY---TAPATASVSNPPRPRPNQPNAVPQF 203
           GT A L+ V  DRVII N  R+ETLML+G+DY            N P P+  + + V   
Sbjct: 142 GTNATLQKVYNDRVIIKNGVRNETLMLDGIDYDEANRRREMQARNRPEPQEEEEDTVELS 201

Query: 204 EDKVDAIREAIARNPQEIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVA 263
           E+ ++A   A+   P     ++ +S    + +++GY+VSPGK+P LF+S GLQ GD+   
Sbjct: 202 EEALEA-TAALRERPANFTDFISISPKTEEGQLIGYQVSPGKEPELFKSAGLQAGDVITQ 260

Query: 264 LNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYI 303
           +NGLDLTD          +     + LT+ RDG    +Y+
Sbjct: 261 INGLDLTDLQQSQEALSELRNAQTIELTIIRDGSLTTLYL 300