Pairwise Alignments

Query, 305 a.a., type II secretion system protein GspC from Vibrio cholerae E7946 ATCC 55056

Subject, 280 a.a., hypothetical protein from Acinetobacter radioresistens SK82

 Score = 55.8 bits (133), Expect = 1e-12
 Identities = 66/288 (22%), Positives = 112/288 (38%), Gaps = 37/288 (12%)

Query: 21  LRWQKPISEG--LTLLLLVASAWTLGKMVWVVSAEQTPVPTWSPTLSGLKAERQPLDISV 78
           + W K    G  +  LL++   W L  + W V+A             G++ ER  L    
Sbjct: 11  ISWSKLDRAGPFVLALLILIFCWKLAALFWWVAAPP----------QGIQFERVMLGSQQ 60

Query: 79  LQKGEL--FGVFTEPKEAPVVEQPVVVDAPKTRLSLVLSGVVASNDAQKSLAVIANRGVQ 136
            Q   +  F +F EP       Q    +     L++ L GVV     + S AVI    + 
Sbjct: 61  PQIPNISSFSLFYEPG------QSAAANTSAESLNIELQGVVIGYPNRYSSAVIKVDQMA 114

Query: 137 ATYGINEVIEGTQAKLKAVMPDRVIISN-SGRDETLMLEGLD------YTAPATASVSNP 189
             Y + E I  +  +L  V  DRVI+   +G    +  +G++         PA ++ S  
Sbjct: 115 ERYRVGETIANSSFQLAEVYWDRVILRQPNGTSREVQFKGIENGLNQPIVPPADSATSAA 174

Query: 190 PRPRPNQPNAVPQFEDKVDAIREAIARNPQEIFQYVRLSQVKRDDKVLGYRVSPGKDPVL 249
           P P P   +          A+ +AI +  ++  QY++   V       GY V+      L
Sbjct: 175 PSPSPANSSQ--------SALGQAIQKIQEDREQYLQEMGVSSTGN--GYEVTSRTPAAL 224

Query: 250 FESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQ 297
              +GL+ GD  ++LNG  +        L +      ++ + ++R  Q
Sbjct: 225 RSKLGLRPGDRIMSLNGQPVGQGQSDIQLLEQARREGQVKIEIKRGDQ 272