Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 715 a.a., type IV pilus secretin PilQ from Rhodanobacter sp000427505 FW510-R12

 Score =  110 bits (276), Expect = 2e-28
 Identities = 100/353 (28%), Positives = 165/353 (46%), Gaps = 30/353 (8%)

Query: 269 VYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVM----IAAHADTNSLVLTAPQ 324
           V + Y KA D+ ++L   S ++Q   G G    ++R  +     ++    TN+L+L    
Sbjct: 381 VPISYGKAADIAKLL--TSGSMQGGGGAGGSGNTQRGFLSPRGSVSFDTRTNTLLLNDTP 438

Query: 325 DIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIG 384
           D +  + E+I  LD    QVLIE+ IV  ++     LG ++G     +  ++ N   +  
Sbjct: 439 DKIKQLRELIAVLDKPVQQVLIESRIVVASDDFTRELGAKFGVNGRINNTEFQNAATATP 498

Query: 385 NVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWT 444
            +  GL     T+        N N        T G          +I GA  +I +    
Sbjct: 499 ALTAGLGGGNVTSG-----GLNVNLPVTPAAGTFG---------LAILGANYAIDLE--- 541

Query: 445 ALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVIT-GSTAGSNNDNPFQTVDRKE 503
             ++A   +    ++SSP +   +  EA    G+E+  +T  ++AGS   +   TV  K+
Sbjct: 542 --LSAAQTEGRGEVISSPRVITANQQEAVIRQGQEIGYVTFQNSAGSGAGSGTATVQFKD 599

Query: 504 VGIKLKVVPQINEGNSVQLNIEQEVSNVLG---ANGAVDV-RFAKRQLNTSVMVQDGQML 559
             ++LKV P I   N V L I  +   + G   A G+  +     R++NTSV+V +GQ +
Sbjct: 600 AVLELKVTPTITADNRVYLMINVKKDALAGYVDAPGSGKIPTIDTREINTSVLVDNGQTV 659

Query: 560 VLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRD 612
           VLGG+ +     + +KVP LGDIP +G LFR TS    K  L++F+ P I+ +
Sbjct: 660 VLGGIYEINKANTMTKVPGLGDIPGVGVLFRKTSRTNTKAELLIFVTPRILSE 712